Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC64_RS06165 Genome accession   NZ_CP022664
Coordinates   1178032..1178547 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain FORC 064     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173032..1183547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC64_RS06120 (FORC64_1206) csrA 1173619..1173804 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FORC64_RS06150 (FORC64_1207) yqaB 1175262..1175828 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FORC64_RS06155 (FORC64_1208) yqaA 1175825..1176253 (+) 429 WP_001287454.1 YqaA family protein -
  FORC64_RS06160 (FORC64_1209) gshA 1176326..1177882 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FORC64_RS06165 (FORC64_1210) luxS 1178032..1178547 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FORC64_RS06170 (FORC64_1211) emrB 1178611..1180149 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FORC64_RS06175 (FORC64_1212) emrA 1180166..1181338 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FORC64_RS06180 (FORC64_1214) emrR 1181465..1181995 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FORC64_RS06185 (FORC64_1215) ygaH 1182086..1182421 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FORC64_RS06190 (FORC64_1216) ygaZ 1182411..1183148 (-) 738 WP_000445649.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=201972 FORC64_RS06165 WP_001130211.1 1178032..1178547(+) (luxS) [Escherichia coli strain FORC 064]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=201972 FORC64_RS06165 WP_001130211.1 1178032..1178547(+) (luxS) [Escherichia coli strain FORC 064]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731