Detailed information NTG0201969

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC64_RS05895
• Genome accession: NZ_CP022664
• Coordinates: 1125213..1126205 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FORC 064
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1120213..1131205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC64_RS05865 (FORC64_1150)	ispD	1120274..1120984 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC64_RS05870 (FORC64_1151)	ispF	1120984..1121463 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC64_RS05875 (FORC64_1152)	truD	1121460..1122509 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
FORC64_RS05880 (FORC64_1153)	surE	1122490..1123251 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FORC64_RS05885 (FORC64_1154)	pcm	1123245..1123871 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FORC64_RS05890 (FORC64_1156)	nlpD	1124056..1125150 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FORC64_RS05895 (FORC64_1157)	rpoS	1125213..1126205 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FORC64_RS05900 (FORC64_1158)	ygbN	1126299..1127663 (-)	1365	WP_000104459.1	GntP family transporter	-
FORC64_RS05905 (FORC64_1159)	ygbM	1127752..1128528 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
FORC64_RS05910 (FORC64_1160)	ygbL	1128533..1129171 (-)	639	WP_001278994.1	aldolase	-
FORC64_RS05915 (FORC64_1161)	otnK	1129168..1130430 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=201969 FORC64_RS05895 WP_000081550.1 1125213..1126205(+) (rpoS) [Escherichia coli strain FORC 064]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=201969 FORC64_RS05895 WP_000081550.1 1125213..1126205(+) (rpoS) [Escherichia coli strain FORC 064]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715