Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC64_RS04420 Genome accession   NZ_CP022664
Coordinates   834152..834628 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain FORC 064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 829152..839628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC64_RS04385 (FORC64_0855) istA 829726..830973 (-) 1248 Protein_798 IS21-like element ISEc12 family transposase -
  FORC64_RS04390 (FORC64_0857) - 831029..832242 (+) 1214 WP_162830753.1 IS3 family transposase -
  FORC64_RS04395 (FORC64_0858) - 832208..832580 (-) 373 Protein_800 IS21 family transposase -
  FORC64_RS04400 (FORC64_0859) - 832776..832958 (-) 183 Protein_801 DUF5983 family protein -
  FORC64_RS04405 (FORC64_0860) - 833023..833331 (-) 309 Protein_802 TA system toxin CbtA family protein -
  FORC64_RS04410 (FORC64_0861) cbeA 833420..833788 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  FORC64_RS04415 (FORC64_0862) - 833862..834083 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  FORC64_RS04420 (FORC64_0863) radC 834152..834628 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  FORC64_RS04425 (FORC64_0864) - 834643..835128 (-) 486 WP_000213700.1 antirestriction protein -
  FORC64_RS04430 (FORC64_0865) - 835219..836037 (-) 819 WP_024234073.1 DUF932 domain-containing protein -
  FORC64_RS04440 (FORC64_0866) - 836155..836350 (-) 196 Protein_808 DUF905 family protein -
  FORC64_RS04445 (FORC64_0867) - 836421..839267 (-) 2847 WP_114890741.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=201965 FORC64_RS04420 WP_001186192.1 834152..834628(-) (radC) [Escherichia coli strain FORC 064]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=201965 FORC64_RS04420 WP_001186192.1 834152..834628(-) (radC) [Escherichia coli strain FORC 064]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACTCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392