Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC64_RS03825 Genome accession   NZ_CP022664
Coordinates   729095..729571 (+) Length   158 a.a.
NCBI ID   WP_001186706.1    Uniprot ID   -
Organism   Escherichia coli strain FORC 064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 724095..734571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC64_RS03800 - 724145..724711 (+) 567 WP_000287890.1 inovirus-type Gp2 protein -
  FORC64_RS03805 (FORC64_0744) - 724915..725613 (-) 699 Protein_694 IS3 family transposase -
  FORC64_RS03810 (FORC64_0745) - 725609..727357 (+) 1749 Protein_695 Ag43/Cah family autotransporter adhesin -
  FORC64_RS03815 (FORC64_0746) - 727685..728502 (+) 818 Protein_696 DUF932 domain-containing protein -
  FORC64_RS03820 (FORC64_0747) - 728594..729079 (+) 486 WP_000206663.1 antirestriction protein -
  FORC64_RS03825 (FORC64_0748) radC 729095..729571 (+) 477 WP_001186706.1 RadC family protein Machinery gene
  FORC64_RS03830 (FORC64_0749) - 729634..729855 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  FORC64_RS03835 (FORC64_0750) - 729935..730303 (+) 369 WP_001285579.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FORC64_RS03845 (FORC64_0751) tnpA 730401..731078 (+) 678 WP_001373818.1 IS66-like element accessory protein TnpA -
  FORC64_RS03850 (FORC64_0752) tnpB 731078..731425 (+) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  FORC64_RS03855 (FORC64_0753) - 731445..733016 (+) 1572 WP_000381359.1 IS66-like element ISCro1 family transposase -
  FORC64_RS03860 (FORC64_0754) - 733100..733474 (+) 375 WP_001094452.1 TA system toxin CbtA family protein -
  FORC64_RS03865 (FORC64_0755) - 733471..733962 (+) 492 WP_000976868.1 DUF5983 family protein -
  FORC64_RS03870 (FORC64_0756) - 733974..734171 (+) 198 WP_000772035.1 DUF957 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17584.18 Da        Isoelectric Point: 7.2517

>NTDB_id=201962 FORC64_RS03825 WP_001186706.1 729095..729571(+) (radC) [Escherichia coli strain FORC 064]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=201962 FORC64_RS03825 WP_001186706.1 729095..729571(+) (radC) [Escherichia coli strain FORC 064]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
TCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGCGAAGTTACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399