Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BP20092_RS00385 Genome accession   NZ_CP017695
Coordinates   99813..101666 (-) Length   617 a.a.
NCBI ID   WP_099309706.1    Uniprot ID   -
Organism   Bifidobacterium pseudolongum subsp. globosum DSM 20092     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 94813..106666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP20092_RS00365 (BP20092_00365) - 96425..97093 (-) 669 WP_051592108.1 phosphatase PAP2 family protein -
  BP20092_RS00370 (BP20092_00370) - 97202..97606 (+) 405 WP_051592109.1 hypothetical protein -
  BP20092_RS00375 (BP20092_00375) - 97790..98173 (-) 384 WP_026644089.1 VOC family protein -
  BP20092_RS00380 (BP20092_00380) - 98504..99805 (+) 1302 WP_236822948.1 polysaccharide deacetylase family protein -
  BP20092_RS00385 (BP20092_00385) rcrQ 99813..101666 (-) 1854 WP_099309706.1 ABC transporter ATP-binding protein Regulator
  BP20092_RS00390 (BP20092_00390) - 101715..103634 (-) 1920 WP_026644091.1 ABC transporter ATP-binding protein -
  BP20092_RS00395 (BP20092_00395) - 103645..104208 (-) 564 WP_051592110.1 MarR family winged helix-turn-helix transcriptional regulator -
  BP20092_RS00400 (BP20092_00400) - 104480..106000 (-) 1521 WP_026644092.1 amino acid permease -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67765.23 Da        Isoelectric Point: 5.1353

>NTDB_id=201913 BP20092_RS00385 WP_099309706.1 99813..101666(-) (rcrQ) [Bifidobacterium pseudolongum subsp. globosum DSM 20092]
MPGGMGPHGPRGGAPTEKADDLGGVLKDLMRFSRRYIPAIIVALVLGVVGTVCQIIGPDYLGDMTDEITKGLPAMINGKP
VLGAIDMAAVTRIGWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRSAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDA
VGQTLGQSLGSLITSVTLFFGALIMMFANNWLLALCAIAASLLGMVLMLVVMRFSQRYFVKQQAALGDVNGHVEEMYSGH
TVVKAFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLAMSGRIEFGVIVAFMLYIRFF
TQPLSQFAQAFQNLQRCAAGAERVFTFLNEPELADESSKQPLLGMGDNGEITPVEGRVSFEHVKFGYDADRMIIHDFSAD
VQPGQKVAIVGPTGAGKTTMVNLLMRFYEINGGRISIDGINTKDVPRWNVHDQFSMVLQDTWVFQGTVRENIVYAKEGVS
DEQVIAACKAVGLHRYIMSLPDGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLT
EGRTSFVIAHRLSTIRDADMILVMKDGDIVERGTHDDLLARGGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=201913 BP20092_RS00385 WP_099309706.1 99813..101666(-) (rcrQ) [Bifidobacterium pseudolongum subsp. globosum DSM 20092]
ATGCCAGGAGGAATGGGGCCGCATGGCCCGCGCGGTGGTGCGCCCACCGAAAAAGCGGATGATCTGGGCGGCGTGCTCAA
GGACCTGATGCGGTTCAGCCGCCGGTATATCCCGGCGATCATCGTCGCGCTCGTGCTGGGCGTGGTGGGCACGGTCTGCC
AGATCATCGGCCCGGATTATCTGGGTGACATGACCGACGAGATCACCAAGGGCCTGCCCGCGATGATCAACGGCAAGCCG
GTGCTGGGGGCCATCGACATGGCCGCCGTCACGCGCATCGGCTGGACGCTCGTGGCGCTGTATGTGGCGTACGCGCTGTG
CTCGTACGTGCAGAGTTGGATGATGGCGACCGTCACGCAGCGCACGGCGCAACGCCTGCGCTCGGCGATTGACGTGAAGA
TGAACAAACTGCCACTCAAATACTTCGACGAGCACAGCAACGGCGACGTGATGAGCCGCATCACGAACGATGTGGACGCC
GTGGGGCAGACGCTCGGGCAGTCGCTCGGCTCACTGATCACCTCGGTCACGCTGTTCTTCGGCGCACTGATCATGATGTT
CGCGAACAACTGGCTGCTCGCGTTGTGCGCGATCGCGGCGAGCCTGCTGGGCATGGTGCTGATGCTCGTCGTCATGCGGT
TCTCGCAGCGGTACTTCGTCAAGCAGCAGGCTGCTCTTGGCGACGTCAACGGTCACGTCGAGGAGATGTACAGCGGGCAC
ACGGTCGTCAAGGCGTTCGGCGGCGAGGCGGACGCGATCCGCCGGTTCGAGCGCTACAACAACGACCTGTACGAGTCGGG
GTGGAAGAGCCAGTTCCTTTCCGGCTTGATGATGCCGATGATGAACCTCGTCGGTAATCTCGGGTATGTCGTCGTGTGTG
TCGTCGGCGCGTGGCTCGCGATGAGCGGGCGCATCGAATTCGGTGTCATCGTGGCGTTCATGCTGTACATCCGTTTCTTC
ACGCAGCCGCTTTCGCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGGCGCCGAGCGCGTGTTCACGTT
CCTCAACGAACCGGAGCTCGCCGACGAATCGTCCAAGCAGCCACTGCTCGGCATGGGCGACAACGGCGAGATCACGCCGG
TCGAGGGGCGCGTGAGCTTCGAGCACGTCAAGTTCGGGTACGACGCCGACCGCATGATCATCCATGATTTCTCCGCGGAC
GTGCAGCCGGGGCAGAAGGTCGCGATCGTCGGGCCGACGGGCGCGGGCAAGACGACGATGGTCAACCTACTGATGCGGTT
CTACGAGATCAACGGCGGCAGGATTTCGATTGACGGCATCAATACGAAAGATGTGCCGCGCTGGAACGTGCATGACCAGT
TCTCGATGGTGCTGCAGGACACCTGGGTGTTCCAAGGCACCGTGCGCGAGAACATCGTGTATGCGAAGGAGGGCGTGAGC
GACGAGCAGGTCATCGCGGCGTGCAAGGCCGTGGGATTGCACCGCTACATCATGTCGCTGCCCGACGGGTATGACACCGT
GCTCGACGAGTCGGCCACGCTGTCGCAAGGCCAGAAGCAGCTGCTGACGATCGCGCGCGCGATGGTGCAGGATTCGCCGA
TCCTGATCCTCGACGAGGCGACGAGTTCGGTCGATACGCGCACCGAGGAACTGATCCAGACGGCGATGGACAAGCTCACC
GAAGGGCGCACGAGTTTCGTCATCGCGCACCGCCTCTCCACGATCCGCGATGCCGACATGATCCTCGTCATGAAGGACGG
CGACATCGTGGAACGCGGCACGCACGACGATCTGCTCGCGCGCGGCGGTTTCTATGCCGACATCTACAACGCGCAGTTCT
CCCTGGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(395-542)

ABC transporter transmembrane region (ABC_membrane)

(40-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.195

92.869

0.522

Multiple sequence alignment