Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SSU05_1651 Genome accession   CP000407
Coordinates   1564828..1566498 (-) Length   556 a.a.
NCBI ID   ABP90617.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559828..1571498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1645 - 1560514..1561446 (+) 933 ABP90611.1 Transposase and inactivated derivative -
  SSU05_1646 - 1561418..1561855 (+) 438 ABP90612.1 Transposase and inactivated derivative -
  SSU05_1647 - 1562142..1562417 (-) 276 ABP90613.1 nucleoid DNA-binding protein -
  SSU05_1648 - 1562507..1563103 (-) 597 ABP90614.1 Uncharacterized protein conserved in bacteria -
  SSU05_1649 - 1563075..1563938 (-) 864 ABP90615.1 Lysophospholipase L1 and related esterases -
  SSU05_1650 - 1563901..1564734 (-) 834 ABP90616.1 Uncharacterized protein conserved in bacteria -
  SSU05_1651 recN 1564828..1566498 (-) 1671 ABP90617.1 ATPase involved in DNA repair Machinery gene
  SSU05_1652 - 1566492..1566935 (-) 444 ABP90618.1 Arginine repressor -
  SSU05_1653 - 1566910..1567731 (-) 822 ABP90619.1 Predicted rRNA methylase -
  SSU05_1654 - 1567724..1568593 (-) 870 ABP90620.1 Geranylgeranyl pyrophosphate synthase -
  SSU05_1655 - 1568593..1568808 (-) 216 ABP90621.1 Exonuclease VII small subunit -
  SSU05_1656 - 1568783..1570132 (-) 1350 ABP90622.1 Exonuclease VII, large subunit -
  SSU05_1657 - 1570267..1571202 (+) 936 ABP90623.1 Predicted metalloprotease -
  SSU05_1658 - 1571169..1571285 (-) 117 ABP90624.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 63063.37 Da        Isoelectric Point: 4.6542

>NTDB_id=20191 SSU05_1651 ABP90617.1 1564828..1566498(-) (recN) [Streptococcus suis 05ZYH33]
MVAMLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALE
QILLEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSL
KDRYQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLD
NEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYG
GTVDDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVR
FTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIY
KIGQYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=20191 SSU05_1651 ABP90617.1 1564828..1566498(-) (recN) [Streptococcus suis 05ZYH33]
GTGGTAGCCATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGAT
GACCATCCTATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGA
CGACAGATGTTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAG
CAAATTTTGCTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGCCGTGAAATCCTGCAAAATGGCCGTTCGGT
CAGCCGTGTCAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAAC
ATGACCAGGAAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTT
AAAGACCGTTATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGA
ACACAAGGCGCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTC
AACTCAATCAGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGAC
AATGAAGATTTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTA
CAAACAGCTCTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATATAACCAAGCGTCTCAGCGATGTGGTCGATA
ATCTAGATTTTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGT
GGAACTGTCGATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGG
AGATGATTTGGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATG
AATTGGCTGTTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGA
TTTACTAAAGGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAA
GCCTCTGGTTAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAG
GCAAGACTTCCATCGTCTTTGACGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCCATTGCCCAGAAAATTTAT
AAAATCGGACAATATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTAT
TGAGAAAATATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCA
AGATGTTAGCCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(5-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.448

Multiple sequence alignment