Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GD3902_RS14555 | Genome accession | NZ_CP017694 |
| Coordinates | 2870360..2871430 (+) | Length | 356 a.a. |
| NCBI ID | WP_029760727.1 | Uniprot ID | - |
| Organism | Geobacillus thermodenitrificans strain KCTC3902 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2865360..2876430
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GD3902_RS14525 (GD3902_14230) | - | 2865480..2866643 (+) | 1164 | WP_011887806.1 | M14 family metallopeptidase | - |
| GD3902_RS14530 (GD3902_14235) | - | 2866679..2866855 (-) | 177 | WP_008879857.1 | DUF2759 domain-containing protein | - |
| GD3902_RS14535 (GD3902_14240) | - | 2867035..2867667 (+) | 633 | WP_029760723.1 | MBL fold metallo-hydrolase | - |
| GD3902_RS14540 (GD3902_14245) | - | 2867899..2869026 (+) | 1128 | WP_029760724.1 | class I SAM-dependent methyltransferase | - |
| GD3902_RS14545 (GD3902_14250) | - | 2869057..2869299 (-) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GD3902_RS14550 (GD3902_14255) | - | 2869462..2870160 (-) | 699 | WP_029760726.1 | helix-turn-helix transcriptional regulator | - |
| GD3902_RS14555 (GD3902_14260) | comGA | 2870360..2871430 (+) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GD3902_RS14560 (GD3902_14265) | comGB | 2871427..2872455 (+) | 1029 | WP_011887801.1 | competence type IV pilus assembly protein ComGB | - |
| GD3902_RS14565 (GD3902_14270) | - | 2872576..2874105 (-) | 1530 | WP_029760729.1 | recombinase family protein | - |
| GD3902_RS14570 (GD3902_14275) | - | 2874122..2874571 (-) | 450 | WP_029760730.1 | ImmA/IrrE family metallo-endopeptidase | - |
| GD3902_RS14575 (GD3902_14280) | - | 2874594..2875028 (-) | 435 | WP_029760731.1 | helix-turn-helix domain-containing protein | - |
| GD3902_RS14580 (GD3902_14285) | - | 2875263..2875511 (+) | 249 | WP_029760732.1 | helix-turn-helix domain-containing protein | - |
| GD3902_RS14585 (GD3902_14290) | - | 2875570..2875767 (+) | 198 | WP_029760733.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39595.73 Da Isoelectric Point: 8.6314
>NTDB_id=201907 GD3902_RS14555 WP_029760727.1 2870360..2871430(+) (comGA) [Geobacillus thermodenitrificans strain KCTC3902]
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
Nucleotide
Download Length: 1071 bp
>NTDB_id=201907 GD3902_RS14555 WP_029760727.1 2870360..2871430(+) (comGA) [Geobacillus thermodenitrificans strain KCTC3902]
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCTACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGCTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCACATCTGACATTAGCACGCCTCATCCGCAAAGGAATCGCACTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCTACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGCTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCACATCTGACATTAGCACGCCTCATCCGCAAAGGAATCGCACTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
51.585 |
97.472 |
0.503 |
| pilB | Glaesserella parasuis strain SC1401 |
37.83 |
95.787 |
0.362 |