Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FORC61_RS06540 Genome accession   NZ_CP022607
Coordinates   1294462..1296450 (+) Length   662 a.a.
NCBI ID   WP_000481447.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FORC_061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289462..1301450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC61_RS06500 (FORC61_1171) rpmG 1289525..1289674 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  FORC61_RS06505 (FORC61_1172) rpsN 1290145..1290414 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  FORC61_RS06510 (FORC61_1173) guaC 1290571..1291548 (+) 978 WP_000688120.1 GMP reductase -
  FORC61_RS06520 (FORC61_1174) - 1291570..1292586 (+) 1017 WP_169449311.1 CAP domain-containing protein -
  FORC61_RS06525 (FORC61_1175) dinR/lexA 1292966..1293589 (-) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  FORC61_RS06530 (FORC61_1176) sosA 1293732..1293965 (+) 234 WP_000499654.1 DNA damage-induced cell division inhibitor SosA -
  FORC61_RS06535 (FORC61_1177) - 1294102..1294341 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  FORC61_RS06540 (FORC61_1178) recP/tkt 1294462..1296450 (+) 1989 WP_000481447.1 transketolase Machinery gene
  FORC61_RS06545 (FORC61_1179) - 1296728..1296970 (+) 243 WP_000246909.1 YneF family protein -
  FORC61_RS06550 - 1296957..1297055 (+) 99 WP_031824583.1 hypothetical protein -
  FORC61_RS06555 (FORC61_1180) - 1297149..1297616 (+) 468 WP_000966142.1 CcdC family protein -
  FORC61_RS06560 (FORC61_1181) sbcD 1297740..1298861 (+) 1122 WP_000691303.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72279.75 Da        Isoelectric Point: 4.6505

>NTDB_id=201899 FORC61_RS06540 WP_000481447.1 1294462..1296450(+) (recP/tkt) [Staphylococcus aureus strain FORC_061]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDNAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VNLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=201899 FORC61_RS06540 WP_000481447.1 1294462..1296450(+) (recP/tkt) [Staphylococcus aureus strain FORC_061]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCGGCAGGGCATGGTTCAGCATTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACACCAGGTCATCCTGAATACAGACATAC
TGATGGTGTAGAAGTTACTACTGGACCACTTGGACAAGGTTTTGCTATGTCAGTAGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATTTCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAATGCGATTACTACTGCTAAATCTCAAGAAGGACCAACAATT
ATCGAAGTTAAAACAACAATCGGATTTGGTTCACCGAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGATGAAAGAAAATTAACATTTGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAAGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCAATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCAATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAATTACCACGTTT
TGAACTTGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACTGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCGTTACGCTTATCATCAATTATGGGATTAAATG
CTACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
CTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCAGATGGTAATGAAACAAGAGTAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTATTATTAGCTTCAGGTTCAGAA
GTTAATCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAGCAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAACAACAATCTGAAGAATATAAAGAATCAGTTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTAGGATGGCATAAATATGTGGGTACTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATCTAGTAGTTGAAAAATATGGCTTTACAAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.255

100

0.556