Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GD3902_RS08735 Genome accession   NZ_CP017694
Coordinates   1741282..1742655 (-) Length   457 a.a.
NCBI ID   WP_029761778.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736282..1747655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS08715 (GD3902_08515) gltX 1737097..1738566 (-) 1470 WP_029761775.1 glutamate--tRNA ligase -
  GD3902_RS08720 (GD3902_08520) ispF 1738777..1739259 (-) 483 WP_029761776.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GD3902_RS08725 (GD3902_08525) ispD 1739274..1739960 (-) 687 WP_029761777.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GD3902_RS08730 (GD3902_08530) - 1739982..1741076 (-) 1095 WP_008882047.1 PIN/TRAM domain-containing protein -
  GD3902_RS08735 (GD3902_08535) radA 1741282..1742655 (-) 1374 WP_029761778.1 DNA repair protein RadA Machinery gene
  GD3902_RS08740 (GD3902_08540) clpC 1742730..1745165 (-) 2436 WP_029761780.1 ATP-dependent protease ATP-binding subunit ClpC -
  GD3902_RS08745 (GD3902_08545) - 1745162..1746253 (-) 1092 WP_011886620.1 protein arginine kinase -
  GD3902_RS08750 (GD3902_08550) - 1746258..1746806 (-) 549 WP_008882051.1 UvrB/UvrC motif-containing protein -
  GD3902_RS08755 (GD3902_08555) ctsR 1746821..1747282 (-) 462 WP_029761781.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49445.10 Da        Isoelectric Point: 8.0108

>NTDB_id=201881 GD3902_RS08735 WP_029761778.1 1741282..1742655(-) (radA) [Geobacillus thermodenitrificans strain KCTC3902]
MAKKKTKFVCQECGYESAKWLGRCPGCQTWNSFVEEIERTKPAVRGAFLHSEPSGPAKPIPITAVTAAQEPRIETKSVEL
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESVKQVKLRAGRLHAESHQLYVLAEADLEYIV
TAIETIQPACVIVDSIQTMYRTDITSAPGSVAQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLREVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRVIVPKNNLTGWQPPAGVNVIGVSHVAEALEHTML

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=201881 GD3902_RS08735 WP_029761778.1 1741282..1742655(-) (radA) [Geobacillus thermodenitrificans strain KCTC3902]
ATGGCGAAAAAGAAAACAAAATTTGTTTGCCAAGAATGCGGGTATGAATCAGCGAAATGGCTCGGTCGTTGCCCGGGCTG
CCAAACGTGGAACTCGTTCGTTGAAGAAATCGAGCGGACAAAACCGGCTGTGCGCGGGGCGTTTCTTCATTCGGAACCAT
CGGGGCCAGCCAAACCAATTCCGATTACGGCTGTTACGGCAGCACAAGAGCCACGCATTGAAACGAAAAGTGTGGAGCTC
AATCGGGTGCTTGGCGGAGGAATCGTCAAAGGATCGCTCGTCTTAATCGGCGGTGATCCGGGTATTGGCAAATCGACGTT
ATTGCTGCAGACATCGGCACAGCTCGCTGCGGCCGGACATACGGTATTGTATATATCCGGTGAAGAGTCGGTGAAGCAAG
TGAAGCTGCGCGCTGGGCGTCTTCACGCTGAGTCTCATCAACTGTATGTGTTAGCAGAGGCGGATTTGGAATACATTGTA
ACAGCAATTGAAACGATTCAGCCTGCTTGTGTGATTGTCGATTCCATTCAGACGATGTACCGAACGGATATTACATCGGC
GCCGGGCAGTGTTGCCCAAGTGCGCGAGTGCACCGCTGAGCTAATGAAAATCGCCAAGACGAAAGGCATTGCCATTTTCA
TTGTTGGCCATGTGACCAAAGAAGGGGCGATCGCCGGGCCGCGCCTGCTTGAGCATATGGTTGATACCGTTCTTTATTTT
GAAGGGGAGCGGCATCATACGTACCGCATTTTGCGGGCGGTGAAAAACCGCTTCGGTTCAACGAATGAAATCGGTATTTT
TGAAATGCGTGACATCGGGCTGCGCGAAGTAGAAAATCCGTCGGAAGTGTTTTTGGAAGAACGGTCGCGCGGGGCGGCCG
GCTCGACAGTTGTCGCGGCAATGGAGGGGACGCGTCCGGTGCTTGTTGAAATTCAGGCGCTCGTTTCGCCAACGAGTTTC
GGCAACCCGCGGCGGATGGCGACCGGCCTTGATCATAATCGCGTATCGCTGTTAATGGCTGTGCTCGAAAAGCGGGTCGG
GCTCCTGTTGCAAAACCAGGATGCTTACTTGAAAGTGGCAGGTGGAGTAAAGCTTGATGAACCGGCAATCGATTTGGCGG
TCGCCGTCAGCATTGCCTCGAGCTTCCGCGACCGGCCGACAAATCCAGCCGATGTCATTATCGGCGAAGTCGGCTTGACC
GGGGAAGTGCGCCGCGTTTCCCGCATTGAACAGCGCGTGCAAGAAGCCGTCAAATTAGGCTTTTCACGGGTCATTGTACC
AAAAAACAATTTGACTGGTTGGCAGCCGCCTGCAGGCGTCAATGTGATCGGTGTTTCGCATGTGGCCGAGGCGCTTGAGC
ATACGATGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.617

100

0.746
  radA Streptococcus mitis NCTC 12261

65.121

99.125

0.646
  radA Streptococcus mitis SK321

64.901

99.125

0.643
  radA Streptococcus pneumoniae Rx1

64.68

99.125

0.641
  radA Streptococcus pneumoniae D39

64.68

99.125

0.641
  radA Streptococcus pneumoniae R6

64.68

99.125

0.641
  radA Streptococcus pneumoniae TIGR4

64.68

99.125

0.641

Multiple sequence alignment