Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GD3902_RS05175 Genome accession   NZ_CP017694
Coordinates   1035172..1036995 (-) Length   607 a.a.
NCBI ID   WP_029761530.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030172..1041995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS05140 (GD3902_05020) - 1030816..1031454 (-) 639 WP_029761535.1 GTP pyrophosphokinase -
  GD3902_RS05145 (GD3902_05025) - 1031581..1031958 (-) 378 WP_029761534.1 hypothetical protein -
  GD3902_RS05150 (GD3902_05030) - 1032093..1032680 (+) 588 WP_008878961.1 CYTH domain-containing protein -
  GD3902_RS05155 (GD3902_05035) - 1032680..1033288 (+) 609 WP_029761533.1 lytic transglycosylase domain-containing protein -
  GD3902_RS05160 (GD3902_05040) - 1033390..1033803 (+) 414 WP_008878963.1 globin -
  GD3902_RS05165 (GD3902_05045) spxH 1033796..1034689 (+) 894 WP_029761532.1 ClpXP adapter protein SpxH -
  GD3902_RS05170 (GD3902_05050) - 1034961..1035158 (+) 198 WP_011886943.1 hypothetical protein -
  GD3902_RS05175 (GD3902_05055) pepF 1035172..1036995 (-) 1824 WP_029761530.1 oligoendopeptidase F Regulator
  GD3902_RS05180 (GD3902_05060) - 1037028..1038314 (-) 1287 WP_035498520.1 competence protein CoiA -
  GD3902_RS05185 (GD3902_05065) cls 1038462..1039970 (-) 1509 WP_008878967.1 cardiolipin synthase -
  GD3902_RS05190 (GD3902_05070) mecA 1040067..1040747 (-) 681 WP_008878968.1 adaptor protein MecA -
  GD3902_RS05195 (GD3902_05075) - 1040964..1041632 (+) 669 WP_029761529.1 TerC family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70323.21 Da        Isoelectric Point: 4.9488

>NTDB_id=201871 GD3902_RS05175 WP_029761530.1 1035172..1036995(-) (pepF) [Geobacillus thermodenitrificans strain KCTC3902]
MTVEENKAKKSLPSRSEIPVEETWRLEDIFPTDDVWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDDRAKGLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYEHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYKSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKSVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLDGLAPLGEEYVSIIKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAQTLTSLYYDLNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIE
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=201871 GD3902_RS05175 WP_029761530.1 1035172..1036995(-) (pepF) [Geobacillus thermodenitrificans strain KCTC3902]
ATGACGGTGGAAGAGAATAAGGCAAAGAAATCGCTCCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCAACCGATGATGTGTGGGAACAGGAGTTTCAGCAAGTAAAGGCGATGATTCCAAAAATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTATCGATGCGTCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACTCGTTTTACCAAGGGCTCGACGACAGGGCGAAAGG
GTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCCATCGATGAAGCGGTGCTGCGTTCGT
TTTTAGAGCAATACGAACCGCTTCGGCTGTATGAGCACGCGTTAGACGAAATCACGCGCCAGCGCCCGCACGTCTTGTCC
GCTGAAGAAGAAGCGCTGTTGGCACAGGCTGCTGAGGTGATGCAGGCGACATCGTCGACGTTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATTCGCGACGAAAATGGGGATGAAGTGGAAGTGACGCACGGCCGGTTTATCCGATTTTTAG
AAAGTACCGACCGCCGCGTTCGTCGCGATGCGTTTCATGCAGTATACCATACGTACGAGAAGTTCCAGAACACGTTTGCC
AACACACTTGCGGGCACGGTGAAAAAAGACAACTTTTTTGCTCGCGTCCGTCGCTACAAATCAGCACGAGAAGCGGCGTT
AGATGCGAACAATATACCGGAAAGCGTCTATGATAATTTAATTGCCACAATTCATGAGCATTTACCGCTTTTGCACCGGT
ATGTGCGGCTGCGCAAAAGCGTACTAGGGCTTGACGAGCTGCATATGTATGACTTATATACTCCGCTCGTGCAAGATGTG
AAAATGGAAGTGACATACGACGAAGCGAAGCAATATATGCTTGACGGGTTGGCGCCGCTTGGCGAGGAATATGTGTCGAT
CATCAAAGAAGGGCTTGAGAACCGATGGGTCGATGTGCGCGAAAATAAAGGAAAACGAAGTGGAGCCTATTCGTCAGGAG
CGTATGGCACCCACCCGTATATTTTGCTGAACTGGCAAGATAATGTGAACAACTTGTTTACGCTCGTACATGAGTTCGGC
CACTCAGTCCATAGTTACTATACGCGCAAAACGCAGCCGTATCCGTATGCTCATTATTCGATTTTTGTCGCTGAAGTGGC
GTCGACATGCAATGAGGCATTGCTGAACGATTATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGCTGA
ACCATTATCTTGAAGGATTCCGCGGTACTGTCTTTCGACAAACGATGTTTGCCGAGTTCGAGCATTTGATCCATCTGAAG
GCGCAAGAAGGAGAGGCGCTGACAGCACAGACGCTCACATCGCTCTATTATGACCTGAACAAAAAATATTTCGGTGATGA
TATGGTGGTTGATGAGGAAATTGGTCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTATATCAATACG
CGACCGGCTTCAGCGCAGCAACGGCGCTTAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTACATCGAG
TTTTTAAAAGCCGGCAGCTCTGATTATCCGATTGAGGTGCTGAAAAAAGCTGGCGTCGATATGACGAGCGCTGAACCGAT
TCGTCAAGCGTGTCAAGTGTTTGCAGAGAAGTTGGAAGAAATGGAGCGCTTGCTTGGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.842

97.858

0.498

Multiple sequence alignment