Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GD3902_RS02465 Genome accession   NZ_CP017694
Coordinates   502017..502964 (-) Length   315 a.a.
NCBI ID   WP_008879449.1    Uniprot ID   A0A0Q0Z089
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497017..507964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS02450 (GD3902_02365) - 499110..500069 (-) 960 WP_029760932.1 siderophore ABC transporter substrate-binding protein -
  GD3902_RS02455 (GD3902_02370) - 500325..501080 (-) 756 WP_008879447.1 ABC transporter ATP-binding protein -
  GD3902_RS02460 (GD3902_02375) - 501074..502024 (-) 951 WP_008879448.1 iron chelate uptake ABC transporter family permease subunit -
  GD3902_RS02465 (GD3902_02380) ceuB 502017..502964 (-) 948 WP_008879449.1 ABC transporter permease Machinery gene
  GD3902_RS02470 (GD3902_02385) gucD 503504..504967 (-) 1464 WP_008879450.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  GD3902_RS02475 (GD3902_02390) cysI 505226..506947 (-) 1722 WP_008879451.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34684.55 Da        Isoelectric Point: 9.4613

>NTDB_id=201865 GD3902_RS02465 WP_008879449.1 502017..502964(-) (ceuB) [Geobacillus thermodenitrificans strain KCTC3902]
MKKWVLLLFGLSLLSLFVGVHDLSPRALWEGDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASASPIVKAAIAVLFAFTGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIIGSVTTFLAYKYDLIQS
VSAWLQGDFSVMMQGRYEMLYISVPLMAIAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAVTSSIEVLTVGSLP
FLGLIVPNIVTMYYGDHLRKVLPVTALAGALFVLVCDLFGRIVIYPYEIPIGLTVGVIGSGVFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=201865 GD3902_RS02465 WP_008879449.1 502017..502964(-) (ceuB) [Geobacillus thermodenitrificans strain KCTC3902]
ATGAAAAAATGGGTGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTGCATGATTTATCCCCCCGTGC
GCTATGGGAGGGAGACCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGTTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTGATTATGCAACAGCTTAGTCAAAACAAATTCGTGTCGCCGACAACGGCGGGAACG
ATGGACTGGGCGCGGCTCGGGCTATTAGTGTCAATGATTTTGTTTGCCTCGGCCTCGCCGATCGTAAAGGCCGCCATTGC
TGTGTTGTTTGCGTTCACCGGAACATTGTTGTTTATGACGGTATTGGACCGTGTCAAGTATAAAGATTCGGTGTTCATTC
CGCTCGTCGGTCTCATGTTTGGTAATATCATCGGCTCGGTGACGACGTTTTTAGCGTATAAATATGATTTGATCCAATCG
GTTTCCGCTTGGCTGCAAGGCGATTTTTCGGTCATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCACTTAT
GGCGATCGCTTACGCGTACGCCAACCGATTTACCATCGCGGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGGTCGATTGTGTATACAGGACTGATCATTGTCGCGGTCACTTCATCGATTGAAGTGTTGACAGTCGGCTCCTTGCCG
TTTTTAGGGTTGATCGTTCCGAATATTGTGACGATGTATTACGGTGATCATTTACGCAAAGTGCTGCCGGTCACTGCGCT
TGCCGGGGCTTTGTTCGTGCTTGTTTGCGATCTGTTTGGTCGGATCGTCATTTATCCATACGAGATTCCGATCGGCTTAA
CGGTCGGGGTGATCGGGAGCGGCGTCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0Z089

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.318

99.683

0.502

Multiple sequence alignment