Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GTID1_RS16100 Genome accession   NZ_CP017690
Coordinates   3219006..3220727 (+) Length   573 a.a.
NCBI ID   WP_008879799.1    Uniprot ID   A0A0Q0UZZ6
Organism   Geobacillus thermodenitrificans strain ID-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3214006..3225727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTID1_RS16075 (GTID1_15735) - 3214194..3214424 (+) 231 WP_008879804.1 exodeoxyribonuclease VII small subunit -
  GTID1_RS16080 (GTID1_15740) - 3214428..3215321 (+) 894 WP_008879803.1 polyprenyl synthetase family protein -
  GTID1_RS16085 (GTID1_15745) dxs 3215586..3217478 (+) 1893 WP_011887782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GTID1_RS16090 (GTID1_15750) - 3217484..3218329 (+) 846 WP_099233363.1 TlyA family RNA methyltransferase -
  GTID1_RS16095 (GTID1_15755) ahrC 3218413..3218862 (+) 450 WP_008879800.1 transcriptional regulator AhrC/ArgR -
  GTID1_RS16100 (GTID1_15760) recN 3219006..3220727 (+) 1722 WP_008879799.1 DNA repair protein RecN Machinery gene
  GTID1_RS16105 (GTID1_15765) spoIVB 3220954..3222249 (+) 1296 WP_011887780.1 SpoIVB peptidase -
  GTID1_RS16115 (GTID1_15770) spo0A 3222487..3223320 (+) 834 WP_087960146.1 sporulation transcription factor Spo0A -
  GTID1_RS16120 (GTID1_15775) - 3223452..3223871 (-) 420 WP_099233365.1 hypothetical protein -
  GTID1_RS16125 (GTID1_15780) - 3224012..3224164 (-) 153 WP_081432649.1 YycC family protein -
  GTID1_RS16130 (GTID1_15785) - 3224273..3225007 (+) 735 WP_011887777.1 glycerophosphodiester phosphodiesterase -
  GTID1_RS16135 (GTID1_15790) - 3225011..3225259 (-) 249 WP_008879793.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63999.33 Da        Isoelectric Point: 4.7872

>NTDB_id=201860 GTID1_RS16100 WP_008879799.1 3219006..3220727(+) (recN) [Geobacillus thermodenitrificans strain ID-1]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CAEVGIDVSEGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEAL
ARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSG
EGRGLDSIGEAMGHLDDVAAMDAALKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=201860 GTID1_RS16100 WP_008879799.1 3219006..3220727(+) (recN) [Geobacillus thermodenitrificans strain ID-1]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATCATTGAATCGCTATCTTTGTCCTTTGACAAAGGACTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATTGATGCGATTCATCTATTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCAGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCACCCATGTTGCCAAAAG
TGCGCTGAGGTCGGCATCGATGTGAGCGAAGGAATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACAACCGCCATATTGCGGGAAGTTGGAGCGACGCTTGTCGATATTCACGGTCAGCATG
AACATCAAGAGCTGATGGATCCATCGCGTCATTTACCGCTTCTTGATGAATTCGGCGGTGCGGAGATGGCGGAGGCGCTC
GCACGCTACCGCGCTGTCTATGAACAGCATGAAGCGTTGGTGAAAAAATTAAAAAAGCTGAGTGAAAATGAACAGCAAAT
GGCGCATCGACTTGATTTATTGACATTTCAGCTGCGCGAAATCGAACAGGCCACACTCGAGCTCGGAGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATTGTCAACTTTCAAAAGATATACAGTGCCATCCAAAAAAGCTATGAAGCGCTCTCCGGT
GAAGGACGCGGCCTTGATTCGATCGGGGAAGCGATGGGCCACCTCGATGATGTCGCCGCGATGGATGCTGCGCTGAAGGA
GGCGTACGAAACAGTTGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAGCTTG
AGTATGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCTGAAATCCAACAGTTAAAACGAAAATACGGCGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGTGAGACGCATGTGCATGA
ACTTGAGCGGCAGCTCGCAGCAGTGACAAGCGATTTGCTGATGGAGGCGGAAAACGTGACCAACGTTCGCCGCACTTACG
CCCGGGAGCTGATTGAACGCATTCACCAAGAGTTAAAAGATTTGTACATGGAGAAGACGCAGTTTGACATCATCTTTGCG
AAACGTGAAGGACCACTCGATGCTCCATTGGTTGATGGCGTGCCGGTTAAGTTTCACGAAGATGGCATCGACGTCGTTGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTGAAACCGCTCGCTAAAGTTGCTTCGGGCGGTGAATTGTCACGGATTA
TGTTAGCGTTGAAAACGATTTTTTCCAAACATCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACAGGCGTCAGC
GGTCGTGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCACCTGCC
GCAAGTGGCTGCCATGGCGGACACGCATTTATTCATCGCCAAAGAAACGGACGGAACGCGTACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTAAAAGAAATCGGGCGAATGATTTCCGGCGTCGAAATGACGGAGTTGACAAAACAGCAT
GCCAAAGAACTGTTAGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UZZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment