Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LB076_RS02785 Genome accession   NZ_CP017688
Coordinates   625680..627041 (+) Length   453 a.a.
NCBI ID   WP_066334913.1    Uniprot ID   A0A1B9E091
Organism   Flavobacterium crassostreae strain LPB0076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620680..632041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB076_RS02765 - 622281..623087 (-) 807 WP_066334905.1 glycogen/starch synthase -
  LB076_RS02770 panC 623195..624043 (+) 849 WP_066334906.1 pantoate--beta-alanine ligase -
  LB076_RS02775 panD 624058..624408 (+) 351 WP_066334909.1 aspartate 1-decarboxylase -
  LB076_RS02780 - 624539..625699 (+) 1161 WP_066334912.1 alpha/beta hydrolase-fold protein -
  LB076_RS02785 radA 625680..627041 (+) 1362 WP_066334913.1 DNA repair protein RadA Machinery gene
  LB076_RS02790 - 627127..627606 (+) 480 WP_141672832.1 hypothetical protein -
  LB076_RS02795 - 628002..628310 (+) 309 WP_066334917.1 antibiotic biosynthesis monooxygenase -
  LB076_RS02800 - 628551..629480 (+) 930 WP_066334919.1 GNAT family N-acetyltransferase -
  LB076_RS02805 - 629498..630595 (+) 1098 WP_066334925.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  LB076_RS02810 - 630604..631863 (+) 1260 WP_066334928.1 O-antigen translocase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49878.42 Da        Isoelectric Point: 6.6475

>NTDB_id=201790 LB076_RS02785 WP_066334913.1 625680..627041(+) (radA) [Flavobacterium crassostreae strain LPB0076]
MAKIKTSFFCQSCGTQYPKWQGQCNSCKEWNTIAEEIVQKQEKVAWKTQGDTPSKAARPLKINEIDSTQEIRMNTTDAEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPISDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTEYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNPGIKIQLVTKIEDVASMLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=201790 LB076_RS02785 WP_066334913.1 625680..627041(+) (radA) [Flavobacterium crassostreae strain LPB0076]
ATGGCAAAGATAAAAACTAGTTTTTTTTGTCAAAGTTGCGGTACCCAATATCCAAAATGGCAAGGACAATGCAATTCTTG
CAAAGAGTGGAATACCATTGCTGAAGAGATCGTCCAAAAACAAGAAAAGGTGGCCTGGAAAACCCAGGGCGACACTCCGA
GCAAAGCAGCTAGGCCTCTAAAAATCAATGAAATTGATTCTACCCAAGAAATCCGGATGAATACCACCGATGCCGAGCTC
AATCGGGTTCTTGGAGGCGGTATTGTTCCTGGATCTTTAACCCTATTGGGAGGCGAGCCTGGTATAGGAAAAAGCACTCT
ATTGCTACAGGTTTCTTTAAAATTACCTTACAAAACACTCTATGTATCTGGCGAAGAAAGTCAGAAACAAATAAAAATGC
GTGCCGAGAGAATCACCCCTATAAGTGATAATTGCTACATACTTACAGAAACCAAAACACAAAACATCTTCAAACAAATT
GAAGCCATACAGCCCGAAATAGTTATTATTGACTCCATACAAACCTTACATACGGAATATATAGAATCTACCGCAGGAAG
CATCTCTCAAATAAGAGAAACCACTGCAGAGCTAATTAAATTTGCCAAAGAAACCAACATTCCGGTAATTTTAATTGGTC
ACATTACCAAAGACGGCAACATAGCCGGCCCTAAAATACTAGAACACATGGTAGATACCGTATTGCAGTTTGAAGGAGAC
CGCAATCATGTTTACCGGATCTTACGCTCTCTCAAAAACCGTTTTGGCTCTACGGCCGAAATAGGAATTTACGAAATGTT
GGGCAGTGGGCTAAGAGAAGTTTCCAACCCCTCCGAAATTTTAATTTCGCACAAAGACGAAGAGCTATCCGGCACGGCAA
TTGCCACCACCCTAGAAGGAATGCGCCCTCTAATGATCGAAATACAATCTTTAGTTAGCACCGCAGTCTACGGTACCCCA
CAACGAAGCACCACAGGATACAATGCCAAAAGACTCAACATGATATTGGCCGTGCTCGAAAAAAGAGCTGGTTTTAGGCT
TGGCGCCAAAGATGTTTTTTTGAACGTAACCGGAGGAATATCCGTAGATGATCCAGCAATAGATCTAGCGGTTGTTGCTG
CCATTTTATCTTCAAATGAAGACATTCCGGTAAATAAAGATTTTTGCTTTGCTGGCGAAGTAGGATTATCCGGAGAAATT
CGCCCAGTAAACAGAGTAGACCAACGGATACAAGAGGCCGAGAAATTAGGGTTTTCGACCATTTTTGTTTCAAAATACAA
CAAAATAGCTTTAAAAAATCCAGGAATTAAAATCCAGTTGGTAACCAAAATTGAGGATGTTGCCAGCATGCTGTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9E091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.781

100

0.501
  radA Streptococcus mitis NCTC 12261

49.781

100

0.501
  radA Streptococcus pneumoniae Rx1

49.451

100

0.497
  radA Streptococcus pneumoniae D39

49.451

100

0.497
  radA Streptococcus pneumoniae R6

49.451

100

0.497
  radA Streptococcus pneumoniae TIGR4

49.451

100

0.497
  radA Bacillus subtilis subsp. subtilis str. 168

47.484

100

0.479

Multiple sequence alignment