Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SSU05_1309 Genome accession   CP000407
Coordinates   1248671..1250884 (-) Length   737 a.a.
NCBI ID   ABP90275.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1243671..1255884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1304 - 1244437..1245159 (-) 723 ABP90270.1 Predicted SAM-dependent methyltransferase -
  SSU05_1305 - 1245122..1245796 (-) 675 ABP90271.1 Putative primosome component and related proteins -
  SSU05_1306 - 1245806..1246798 (-) 993 ABP90272.1 Homoserine trans-succinylase -
  SSU05_1307 - 1246851..1247363 (-) 513 ABP90273.1 Adenine/guanine phosphoribosyltransferase and related PRPP-binding proteins -
  SSU05_1308 - 1247796..1248692 (-) 897 ABP90274.1 hypothetical protein -
  SSU05_1309 recJ 1248671..1250884 (-) 2214 ABP90275.1 Single-stranded DNA-specific exonuclease Machinery gene
  SSU05_1310 - 1251040..1252587 (-) 1548 ABP90276.1 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82694.44 Da        Isoelectric Point: 4.5398

>NTDB_id=20179 SSU05_1309 ABP90275.1 1248671..1250884(-) (recJ) [Streptococcus suis 05ZYH33]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIEN
YEHILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRHDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVLAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFEEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTIADGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=20179 SSU05_1309 ABP90275.1 1248671..1250884(-) (recJ) [Streptococcus suis 05ZYH33]
GTGATAAAGCCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAAAT
TACGAACACATTTTGATTTATGGAGATTATGACGCAGACGGTATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTTACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAAGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAAGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGCGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CAAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGTAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCATGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAACTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCTGTTGAAGCAGTTGACATTTTCAAGGCACTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTGACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTTTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTTCTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGGGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGAAGAGTTTGATGTTCGCTATAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTGCGGATGGGGTCATGCGGGTCA
ACAAAGAGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.69

99.864

0.726
  recJ Bacillus subtilis subsp. subtilis str. 168

37.968

100

0.385

Multiple sequence alignment