Detailed information NTG0201758

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSG32_RS16545
• Genome accession: NZ_CP022552
• Coordinates: 3277136..3278125 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-R
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3272136..3283125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSG32_RS16530 (BSG32_16540)	-	3273234..3273728 (-)	495	Protein_2944	ATPase domain-containing protein	-
BSG32_RS16535 (BSG32_16545)	pncC	3273928..3274410 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
BSG32_RS16540 (BSG32_16550)	mutS	3274495..3277056 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
BSG32_RS16545 (BSG32_16555)	rpoS	3277136..3278125 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
BSG32_RS16550 (BSG32_16560)	-	3278206..3279129 (-)	924	WP_021450027.1	peptidoglycan DD-metalloendopeptidase family protein	-
BSG32_RS16555 (BSG32_16565)	-	3279144..3279770 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BSG32_RS16560 (BSG32_16570)	surE	3279770..3280546 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
BSG32_RS16565 (BSG32_16575)	truD	3280546..3281589 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
BSG32_RS16570 (BSG32_16580)	ispF	3281636..3282112 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSG32_RS16575 (BSG32_16585)	ispD	3282130..3282834 (-)	705	WP_017449147.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BSG32_RS16580 (BSG32_16590)	ftsB	3282836..3283117 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=201758 BSG32_RS16545 WP_005478537.1 3277136..3278125(-) (rpoS) [Vibrio parahaemolyticus strain MAVP-R]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=201758 BSG32_RS16545 WP_005478537.1 3277136..3278125(-) (rpoS) [Vibrio parahaemolyticus strain MAVP-R]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851