Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSG32_RS10075 Genome accession   NZ_CP022552
Coordinates   2030909..2032453 (-) Length   514 a.a.
NCBI ID   WP_029559987.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025909..2037453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS10055 (BSG32_10065) - 2025923..2027353 (-) 1431 WP_021449095.1 lipopolysaccharide biosynthesis protein -
  BSG32_RS10060 (BSG32_10070) - 2027346..2028518 (-) 1173 WP_021449094.1 glycosyltransferase family 4 protein -
  BSG32_RS10065 (BSG32_10075) - 2028529..2029713 (-) 1185 WP_021449093.1 glycosyltransferase -
  BSG32_RS10070 (BSG32_10080) - 2029864..2030934 (-) 1071 WP_021449092.1 glycosyltransferase family 4 protein -
  BSG32_RS10075 (BSG32_10085) luxO 2030909..2032453 (-) 1545 WP_029559987.1 sigma-54 dependent transcriptional regulator Regulator
  BSG32_RS10085 (BSG32_10095) - 2032725..2033105 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  BSG32_RS10090 (BSG32_10100) - 2033118..2033804 (-) 687 WP_021449090.1 CpsD/CapB family tyrosine-protein kinase -
  BSG32_RS10095 (BSG32_10105) - 2033804..2035870 (-) 2067 WP_049877691.1 SLBB domain-containing protein -
  BSG32_RS10100 (BSG32_10110) - 2035903..2036805 (-) 903 WP_031776455.1 OmpA family protein -
  BSG32_RS10105 (BSG32_10115) - 2036832..2037152 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57448.33 Da        Isoelectric Point: 5.9796

>NTDB_id=201735 BSG32_RS10075 WP_029559987.1 2030909..2032453(-) (luxO) [Vibrio parahaemolyticus strain MAVP-R]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINKNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPVEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=201735 BSG32_RS10075 WP_029559987.1 2030909..2032453(-) (luxO) [Vibrio parahaemolyticus strain MAVP-R]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAACCTTA
CGACATTTTCCATGTCGAGACCGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATAAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAACATTTTCTCACAACTTATGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACACAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCGTTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477

Multiple sequence alignment