Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CG712_RS02340 Genome accession   NZ_CP022547
Coordinates   439686..441896 (-) Length   736 a.a.
NCBI ID   WP_096811510.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 434686..446896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS02315 (CG712_02340) - 435629..435976 (-) 348 WP_231906158.1 hypothetical protein -
  CG712_RS02320 (CG712_02345) nth 436524..437168 (-) 645 WP_011681255.1 endonuclease III -
  CG712_RS02325 (CG712_02350) - 437168..437866 (-) 699 WP_002947201.1 DnaD domain-containing protein -
  CG712_RS02330 (CG712_02355) metA 437938..438882 (-) 945 WP_087009990.1 homoserine O-acetyltransferase MetA -
  CG712_RS02335 (CG712_02360) - 439053..439571 (-) 519 WP_002947203.1 adenine phosphoribosyltransferase -
  CG712_RS02340 (CG712_02365) recJ 439686..441896 (-) 2211 WP_096811510.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CG712_RS02345 (CG712_02370) - 441909..442676 (-) 768 WP_084829664.1 SDR family NAD(P)-dependent oxidoreductase -
  CG712_RS02350 (CG712_02375) rnz 442676..443605 (-) 930 WP_002947210.1 ribonuclease Z -
  CG712_RS02355 (CG712_02380) - 443637..444284 (-) 648 WP_011681259.1 cystathionine beta-lyase -
  CG712_RS02360 (CG712_02385) hflX 444277..445515 (-) 1239 WP_011226137.1 GTPase HflX -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82615.92 Da        Isoelectric Point: 4.3927

>NTDB_id=201591 CG712_RS02340 WP_096811510.1 439686..441896(-) (recJ) [Streptococcus thermophilus strain B59671]
MITSTYDWKINTKEPDAGFFKLAKEHGLAKTAAKIAYERGIRTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKIAPQLNALGRLDDPNPAIELLTGFDDEEAQAISLEINAKN
EERKEVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSLDTIRSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLADVRVD
NVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELGFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYNQDQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=201591 CG712_RS02340 WP_096811510.1 439686..441896(-) (recJ) [Streptococcus thermophilus strain B59671]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGACTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGCAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCGATTGTCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTTATCATTACAGTGGATAATGGGGTAGCTGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGCCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCCTTTAAGTATTTGGCAGGTTGTGGAGTAGCTTTCAAAATAGCAACGGCCCTCCTCG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGTATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAAATAGCCCCTCAACTCAATGCCTTAGGACGTTTAGATGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAGCGCAAGCCATTTCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTGGATAAACCAGTTCAGGTTTT
GGCTAAGGAAGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGCCGCATCATGGAGCAGATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCCTGGCTAAGGGGTCAGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCGGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TACAACTCGGTGAGCTTAGCTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTTAAGGTTAA
GCAAGGCAAAGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACGCTGTCCGTTAATGTATGGAATGGCCAGACAACACTACAGCTCATGTTGGCAGATGTGCGCGTGGAC
AATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGGAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGGCTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAATCAGGATCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

66.892

100

0.673
  recJ Bacillus subtilis subsp. subtilis str. 168

37.132

100

0.394

Multiple sequence alignment