Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CG712_RS02285 Genome accession   NZ_CP022547
Coordinates   430103..431773 (-) Length   556 a.a.
NCBI ID   WP_096811508.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 425103..436773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS02250 (CG712_02275) - 425146..425838 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  CG712_RS02255 (CG712_02280) - 426093..427031 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  CG712_RS02260 (CG712_02285) - 427096..427296 (-) 201 WP_002950995.1 hypothetical protein -
  CG712_RS02265 (CG712_02290) - 427355..427630 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  CG712_RS02270 (CG712_02295) - 427767..428336 (-) 570 WP_084829656.1 YpmS family protein -
  CG712_RS02275 (CG712_02300) - 428329..429203 (-) 875 Protein_442 SGNH/GDSL hydrolase family protein -
  CG712_RS02280 (CG712_02305) - 429196..430032 (-) 837 WP_011226124.1 DegV family protein -
  CG712_RS02285 (CG712_02310) recN 430103..431773 (-) 1671 WP_096811508.1 DNA repair protein RecN Machinery gene
  CG712_RS02290 (CG712_02315) - 431782..432228 (-) 447 WP_084829658.1 arginine repressor -
  CG712_RS02295 (CG712_02320) - 432176..433042 (-) 867 WP_096811509.1 TlyA family RNA methyltransferase -
  CG712_RS02300 (CG712_02325) - 433035..433907 (-) 873 WP_011226128.1 polyprenyl synthetase family protein -
  CG712_RS02305 (CG712_02330) - 433907..434122 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  CG712_RS02310 (CG712_02335) xseA 434100..435440 (-) 1341 WP_011226129.1 exodeoxyribonuclease VII large subunit -
  CG712_RS02315 (CG712_02340) - 435629..435976 (-) 348 WP_231906158.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62526.69 Da        Isoelectric Point: 4.4999

>NTDB_id=201590 CG712_RS02285 WP_096811508.1 430103..431773(-) (recN) [Streptococcus thermophilus strain B59671]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHINMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SYGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=201590 CG712_RS02285 WP_096811508.1 430103..431773(-) (recN) [Streptococcus thermophilus strain B59671]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACTGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGAGCATCTAGCGAGG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTGATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAACATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTTCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTTATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45