Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SSU05_0881 Genome accession   CP000407
Coordinates   854771..855844 (+) Length   357 a.a.
NCBI ID   ABP89847.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 849771..860844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0877 - 850890..851558 (+) 669 ABP89843.1 hypothetical protein -
  SSU05_0878 - 851562..852302 (+) 741 ABP89844.1 hypothetical protein -
  SSU05_0879 - 852367..852804 (+) 438 ABP89845.1 Adenylylsulfate kinase and related kinases -
  SSU05_0880 - 853894..854415 (+) 522 ABP89846.1 hypothetical protein -
  SSU05_0881 xerS 854771..855844 (+) 1074 ABP89847.1 Integrase Machinery gene
  SSU05_0882 - 855914..857422 (-) 1509 ABP89848.1 Phosphomannomutase -
  SSU05_0883 - 857475..858440 (-) 966 ABP89849.1 Signal transduction histidine kinase -
  SSU05_0884 braR 858437..858889 (-) 453 ABP89850.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_0885 braR 858886..859110 (-) 225 ABP89851.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_0886 - 859140..859397 (-) 258 ABP89852.1 Cytotoxic translational repressor of toxin-antitoxin stability system -
  SSU05_0887 - 859381..859617 (-) 237 ABP89853.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 41616.85 Da        Isoelectric Point: 9.2257

>NTDB_id=20158 SSU05_0881 ABP89847.1 854771..855844(+) (xerS) [Streptococcus suis 05ZYH33]
MMRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDM
EAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQ
KLFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRD
SVNVAGFAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDA
TKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=20158 SSU05_0881 ABP89847.1 854771..855844(+) (xerS) [Streptococcus suis 05ZYH33]
ATGATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCA
GTCAAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAATGGTTAC
AGGATTCGGATTTGGTGGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACAAAAAAAGATATG
GAAGCTTTCATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCAT
TAACCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACT
TCTACCGCAATGTCATGAAAAAGGTATCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAA
AAGCTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGC
CCTCTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAG
AAGCGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGAC
TCGGTCAATGTGGCTGGGTTTGCTAAGCCCTACTTAGAAGCCTACATGGGCATCCGTCAGCAACGCTACAAGGCTGAAAA
AACGGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCTAACCGTATCGATGCTTCTTCTATTGAAAAAATGGTTG
CCAAGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCC
ACCAAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAA
CGATGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(191-345)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(34-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

99.72

0.829

Multiple sequence alignment