Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CGL27_RS33160 Genome accession   NZ_CP022545
Coordinates   7688451..7690610 (+) Length   719 a.a.
NCBI ID   WP_240451025.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7683451..7695610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS33135 (CGL27_32805) - 7683648..7683881 (-) 234 WP_078643950.1 Lrp/AsnC ligand binding domain-containing protein -
  CGL27_RS33140 (CGL27_32810) - 7684019..7684987 (+) 969 WP_119991618.1 thiamine-phosphate kinase -
  CGL27_RS33145 (CGL27_32815) thiD 7685165..7685995 (+) 831 WP_119991619.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CGL27_RS33150 (CGL27_32820) rpmB 7686106..7686291 (-) 186 WP_009714771.1 50S ribosomal protein L28 -
  CGL27_RS33155 (CGL27_32825) - 7686557..7688322 (+) 1766 Protein_6549 DAK2 domain-containing protein -
  CGL27_RS33160 (CGL27_32830) recG 7688451..7690610 (+) 2160 WP_240451025.1 ATP-dependent DNA helicase RecG Machinery gene
  CGL27_RS33165 (CGL27_32835) rsmD 7690796..7691383 (+) 588 WP_119991621.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CGL27_RS33170 (CGL27_32840) coaD 7691380..7691889 (+) 510 WP_078643959.1 pantetheine-phosphate adenylyltransferase -
  CGL27_RS33175 (CGL27_32845) - 7691997..7693109 (+) 1113 WP_119991622.1 cell division initiation protein -
  CGL27_RS33180 (CGL27_32850) - 7693311..7693901 (+) 591 WP_240450723.1 YceD family protein -
  CGL27_RS33185 (CGL27_32855) rpmF 7693904..7694077 (+) 174 WP_009714764.1 50S ribosomal protein L32 -
  CGL27_RS33190 (CGL27_32860) rnc 7694097..7694933 (+) 837 WP_078643962.1 ribonuclease III -

Sequence

Protein


Download         Length: 719 a.a.        Molecular weight: 77548.51 Da        Isoelectric Point: 5.9398

>NTDB_id=201549 CGL27_RS33160 WP_240451025.1 7688451..7690610(+) (recG) [Streptomyces sp. 11-1-2]
MADHLDLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHTFNGGRGRRLEVTITDGSGRLQLVFFGKG
VHKPRAELQPGTRAMFAGKVSVFNRKRQLAHPEFKALGAESGAEAVEAFAHQLLPLYPACKQMESWQIQQAIDTVLGPAG
HEETALAGLVDPLPDGLREGRGLATLPEALRKIHRPATKTDIAMARDRLKWDEAFVLQVALARRRRADAQLPAAPRKPVP
DGLLTAFDARLPFTLTDGQRRVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAMLAPTEVLAQQHH
RSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFG
VEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKPHFLTRAWERVREEVAAG
HQGYVVCPRIGDDVGDEGDAPKGAASPSPEDEAEKRPPLAVVEVAEQLVKGPLSGLRVEVLHGRMQPEAKDDVMRRFAAG
EVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTDMPEGSPARARLGAVAATLDGFEL
SRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEAAAIVADDPELTGYPELRTALDALLDKEREEYLDKG

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=201549 CGL27_RS33160 WP_240451025.1 7688451..7690610(+) (recG) [Streptomyces sp. 11-1-2]
ATGGCCGACCATCTCGACCTGCACACCGTCGGCGATCTGCTGCACCACTACCCGCGGCGGTACGCCGAGCGCGGTGAGCT
GACCCGGCTGTCCGATCTGCCCCTGGACGAGCATGTGACCGTGGTGGCGCAGGTCGCCGACGCCCGGGTGCACACGTTCA
ACGGCGGCCGGGGCCGCCGGCTGGAGGTCACCATCACCGACGGCAGCGGCCGTCTCCAACTCGTCTTCTTCGGCAAGGGT
GTGCACAAGCCGCGGGCGGAGCTCCAGCCCGGCACCCGCGCGATGTTCGCCGGGAAGGTCTCGGTCTTCAACCGCAAGCG
GCAGCTGGCCCACCCGGAGTTCAAGGCGCTGGGCGCGGAGAGCGGCGCGGAGGCCGTGGAGGCGTTCGCCCATCAGCTGC
TGCCGCTCTACCCGGCGTGCAAGCAGATGGAGTCCTGGCAGATCCAGCAGGCCATCGACACCGTGCTGGGCCCGGCCGGC
CACGAGGAGACCGCGCTGGCCGGGCTCGTCGACCCGCTGCCCGACGGCCTCCGCGAGGGCCGGGGGCTGGCCACGCTCCC
CGAGGCGCTGCGCAAGATCCACCGACCGGCCACCAAGACCGATATCGCGATGGCCCGGGACCGCCTGAAGTGGGACGAGG
CGTTCGTCCTGCAGGTGGCGCTCGCCCGGCGCCGCCGGGCCGACGCCCAACTGCCCGCGGCGCCCCGCAAGCCCGTGCCG
GACGGGCTGCTGACCGCCTTCGACGCCCGGCTGCCCTTCACTCTCACCGACGGCCAGCGCCGGGTCAGCGAGGAGATCTT
CGCCGACCTCGCCACCGACCACCCCATGCACCGGCTGCTCCAGGGCGAGGTCGGCTCGGGCAAGACCATGGTCGCGCTGC
GCGCGATGCTCGGCGTCGTGGACGCCGGGGGACAGGCGGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCAC
CGCTCGATCACCGAGATGATGGGGGAGCTGGCCGAGGGAGGAATGCTCGGCGGTGCGGAGCAGGGCACCAAAGTGGTGCT
GCTCACCGGTTCCATGGGCGCCGCTGCCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCG
GCACCCATGCCCTGATCGAGGACAAGGTCCAGTTCCACGACCTGGGGCTGGTGGTCGTCGACGAGCAGCACCGCTTCGGG
GTCGAGCAGCGCGACGCCCTGCGCTCCAAGGGCAAGCAGCCCCCGCATCTGCTGGTGATGACGGCCACCCCGATCCCGCG
CACCGTCGCCATGACCGTCTTCGGCGACCTGGAGACCTCCGTCCTGGACCAGTTGCCCTCGGGCCGCTCCCCGATCGCGT
CCCATGTGGTGCCCGCCAAGGACAAGCCGCACTTCCTGACCCGCGCCTGGGAGCGGGTGCGCGAGGAGGTGGCCGCCGGG
CACCAAGGGTATGTGGTGTGCCCGCGGATCGGGGACGACGTCGGCGATGAGGGGGACGCGCCCAAGGGCGCCGCGAGCCC
GTCCCCCGAGGACGAGGCCGAGAAGCGCCCGCCGCTGGCCGTCGTCGAGGTCGCCGAGCAGCTCGTCAAGGGCCCGCTGA
GCGGTCTGCGGGTGGAGGTGCTGCACGGGCGGATGCAGCCCGAGGCCAAGGACGACGTGATGCGCCGCTTCGCCGCGGGC
GAGGTGGACGTCCTGGTCGCCACGACCGTCATCGAGGTCGGTGTCAACGTCCCCAACGCCACCGCCATGGTGATCATGGA
CGCCGACCGGTTCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCCGCGTCGGCCGTGGCTCGGCCGCCGGGCTGTGTCTGC
TGGTGACCGACATGCCCGAGGGCAGCCCGGCCCGGGCGCGGCTGGGCGCGGTCGCGGCCACGCTCGACGGCTTCGAGCTG
TCCCGGATCGACCTGGAGCAGCGCCGGGAGGGCGATGTGCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGGT
CCTCGCCGTCATCGACGACGAGGAAGTCATCGCGGCGGCCCGGGAGGAGGCGGCCGCGATCGTCGCCGACGACCCGGAGC
TGACCGGATACCCGGAGCTGCGCACCGCCCTGGACGCCCTGCTGGACAAGGAGCGCGAGGAGTACCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(277-429)

Helicase conserved C-terminal domain (Helicase_C)

(535-606)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(634-695)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(39-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.156

98.053

0.374