Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BKN48_RS18710 Genome accession   NZ_CP017676
Coordinates   3561944..3562837 (+) Length   297 a.a.
NCBI ID   WP_038828237.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3556944..3567837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS18690 (BKN48_18690) - 3557614..3559344 (+) 1731 WP_003232003.1 hypothetical protein -
  BKN48_RS18695 (BKN48_18695) ylqH 3559341..3559622 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  BKN48_RS18700 (BKN48_18700) sucC 3559795..3560952 (+) 1158 WP_070548961.1 ADP-forming succinate--CoA ligase subunit beta -
  BKN48_RS18705 (BKN48_18705) sucD 3560981..3561883 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  BKN48_RS18710 (BKN48_18710) dprA 3561944..3562837 (+) 894 WP_038828237.1 DNA-processing protein DprA Machinery gene
  BKN48_RS18715 (BKN48_18715) topA 3563025..3565100 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  BKN48_RS18720 (BKN48_18720) trmFO 3565176..3566483 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BKN48_RS18725 (BKN48_18725) xerC 3566551..3567465 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32860.20 Da        Isoelectric Point: 10.0054

>NTDB_id=201530 BKN48_RS18710 WP_038828237.1 3561944..3562837(+) (dprA) [Bacillus subtilis strain VV2]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLAAHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=201530 BKN48_RS18710 WP_038828237.1 3561944..3562837(+) (dprA) [Bacillus subtilis strain VV2]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGCTCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment