Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BKN48_RS17645 Genome accession   NZ_CP017676
Coordinates   3357298..3357762 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain VV2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3352298..3362762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS17625 (BKN48_17625) kinA 3352765..3354585 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  BKN48_RS17630 (BKN48_17630) dapX 3354595..3355776 (-) 1182 WP_014476653.1 aminotransferase A -
  BKN48_RS17635 (BKN48_17635) - 3355978..3356139 (-) 162 WP_014476654.1 hypothetical protein -
  BKN48_RS17640 (BKN48_17640) cheV 3356343..3357254 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  BKN48_RS17645 (BKN48_17645) kre 3357298..3357762 (-) 465 WP_003232406.1 YkyB family protein Regulator
  BKN48_RS17650 (BKN48_17650) ykuC 3357888..3359180 (-) 1293 WP_014479656.1 MFS transporter -
  BKN48_RS17655 (BKN48_17655) ltdD 3359256..3359750 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  BKN48_RS17660 (BKN48_17660) ppeE 3359807..3360667 (-) 861 WP_070548893.1 metallophosphoesterase -
  BKN48_RS17665 (BKN48_17665) fadH 3360810..3361574 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=201527 BKN48_RS17645 WP_003232406.1 3357298..3357762(-) (kre) [Bacillus subtilis strain VV2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=201527 BKN48_RS17645 WP_003232406.1 3357298..3357762(-) (kre) [Bacillus subtilis strain VV2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTTTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment