Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BKN48_RS15660 Genome accession   NZ_CP017676
Coordinates   2996353..2996931 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain VV2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2991353..3001931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS21800 - 2991864..2992379 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  BKN48_RS21805 - 2992668..2993246 (-) 579 Protein_3032 protoglobin domain-containing protein -
  BKN48_RS15645 (BKN48_15645) comW 2993301..2994830 (-) 1530 WP_021479617.1 FAD-dependent oxidoreductase -
  BKN48_RS15650 (BKN48_15650) yhxC 2994942..2995799 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  BKN48_RS15655 (BKN48_15655) yhzC 2995827..2996060 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BKN48_RS15660 (BKN48_15660) comK 2996353..2996931 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BKN48_RS15665 (BKN48_15665) yhxD 2996976..2997875 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BKN48_RS15670 (BKN48_15670) yhjA 2998092..2998361 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  BKN48_RS15675 (BKN48_15675) yhjB 2998405..2999874 (-) 1470 WP_070548774.1 sodium:solute symporter family protein -
  BKN48_RS15680 (BKN48_15680) yhjC 2999871..3000071 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BKN48_RS15685 (BKN48_15685) - 3000270..3000641 (-) 372 WP_014476361.1 hypothetical protein -
  BKN48_RS15690 (BKN48_15690) yhjE 3000793..3001416 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  BKN48_RS15695 (BKN48_15695) lepB 3001418..3001924 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=201515 BKN48_RS15660 WP_003245329.1 2996353..2996931(+) (comK) [Bacillus subtilis strain VV2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=201515 BKN48_RS15660 WP_003245329.1 2996353..2996931(+) (comK) [Bacillus subtilis strain VV2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATTGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment