Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BKN48_RS10070 Genome accession   NZ_CP017676
Coordinates   1911548..1912660 (+) Length   370 a.a.
NCBI ID   WP_015715082.1    Uniprot ID   A0A8E0S8Z1
Organism   Bacillus subtilis strain VV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906548..1917660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS10045 (BKN48_10045) rnpA 1907257..1907607 (-) 351 WP_021481107.1 ribonuclease P protein component -
  BKN48_RS10050 (BKN48_10050) rpmH 1907759..1907893 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BKN48_RS10055 (BKN48_10055) dnaA 1908520..1909860 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  BKN48_RS10060 (BKN48_10060) dnaN 1910050..1911186 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  BKN48_RS10065 (BKN48_10065) rlbA 1911317..1911532 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  BKN48_RS10070 (BKN48_10070) recF 1911548..1912660 (+) 1113 WP_015715082.1 DNA replication/repair protein RecF Machinery gene
  BKN48_RS10075 (BKN48_10075) remB 1912678..1912923 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  BKN48_RS10080 (BKN48_10080) gyrB 1912978..1914894 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BKN48_RS10085 (BKN48_10085) gyrA 1915105..1917570 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=201498 BKN48_RS10070 WP_015715082.1 1911548..1912660(+) (recF) [Bacillus subtilis strain VV2]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=201498 BKN48_RS10070 WP_015715082.1 1911548..1912660(+) (recF) [Bacillus subtilis strain VV2]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTGCAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment