Detailed information NTG0201494

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BKN48_RS08140
• Genome accession: NZ_CP017676
• Coordinates: 1540282..1541427 (+)
• Length: 381 a.a.
• NCBI ID: WP_070547991.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain VV2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1535282..1546427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKN48_RS08115 (BKN48_08115)	albF	1535298..1536578 (+)	1281	WP_070547983.1	M16 family metallopeptidase	-
BKN48_RS08120 (BKN48_08120)	albG	1536575..1537276 (+)	702	WP_070547986.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
BKN48_RS08125 (BKN48_08125)	ywhL	1537282..1538658 (-)	1377	WP_070547988.1	YncE family protein	-
BKN48_RS08130 (BKN48_08130)	ywhK	1538697..1540052 (-)	1356	WP_070547990.1	YncE family protein	-
BKN48_RS21705 (BKN48_08135)	-	1540049..1540279 (-)	231	Protein_1603	hypothetical protein	-
BKN48_RS08140 (BKN48_08140)	rapF	1540282..1541427 (+)	1146	WP_070547991.1	tetratricopeptide repeat protein	Regulator
BKN48_RS08145 (BKN48_08145)	-	1541411..1541530 (+)	120	WP_070547992.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BKN48_RS08150 (BKN48_08150)	ywhH	1541630..1542076 (+)	447	Protein_1606	YbaK/EbsC family protein	-
BKN48_RS08155 (BKN48_08155)	speB	1542135..1543007 (-)	873	WP_003227545.1	agmatinase	-
BKN48_RS08160 (BKN48_08160)	speE	1543068..1543898 (-)	831	WP_003227543.1	spermidine synthase	-
BKN48_RS08165 (BKN48_08165)	pbpG	1544100..1546175 (+)	2076	WP_032727073.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45602.25 Da
• Isoelectric Point: 5.1572

>NTDB_id=201494 BKN48_RS08140 WP_070547991.1 1540282..1541427(+) (rapF) [Bacillus subtilis strain VV2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIHVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=201494 BKN48_RS08140 WP_070547991.1 1540282..1541427(+) (rapF) [Bacillus subtilis strain VV2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGCCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TCAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_8) (223-249)

• Tetratricopeptide repeat (TPR_8) (193-213)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57