Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BKN48_RS03265 Genome accession   NZ_CP017676
Coordinates   564398..565144 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559398..570144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS03240 (BKN48_03240) mreC 559803..560675 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  BKN48_RS03245 (BKN48_03245) mreB 560706..561719 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BKN48_RS03250 (BKN48_03250) radC 561811..562506 (-) 696 WP_014480455.1 RadC family protein -
  BKN48_RS03255 (BKN48_03255) maf 562543..563112 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  BKN48_RS03260 (BKN48_03260) spoIIB 563266..564264 (-) 999 WP_070547606.1 stage II sporulation protein SpoIIB -
  BKN48_RS03265 (BKN48_03265) comC 564398..565144 (-) 747 WP_021480242.1 prepilin peptidase Machinery gene
  BKN48_RS03270 (BKN48_03270) folC 565285..566577 (-) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BKN48_RS03275 (BKN48_03275) valS 566637..569279 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  BKN48_RS03280 (BKN48_03280) - 569727..569918 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=201476 BKN48_RS03265 WP_021480242.1 564398..565144(-) (comC) [Bacillus subtilis strain VV2]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=201476 BKN48_RS03265 WP_021480242.1 564398..565144(-) (comC) [Bacillus subtilis strain VV2]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment