Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CGL27_RS04710 Genome accession   NZ_CP022545
Coordinates   1129498..1130157 (+) Length   219 a.a.
NCBI ID   WP_119984775.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124498..1135157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS04695 (CGL27_04655) - 1125296..1127866 (+) 2571 WP_162953263.1 alpha-L-arabinofuranosidase C-terminal domain-containing protein -
  CGL27_RS04700 (CGL27_04660) - 1127900..1128142 (-) 243 WP_119984771.1 hypothetical protein -
  CGL27_RS04705 (CGL27_04665) - 1128301..1129482 (+) 1182 WP_119984774.1 histidine kinase -
  CGL27_RS04710 (CGL27_04670) vraR 1129498..1130157 (+) 660 WP_119984775.1 response regulator transcription factor Regulator
  CGL27_RS04715 (CGL27_04675) - 1130352..1130996 (+) 645 WP_119994246.1 TetR family transcriptional regulator -
  CGL27_RS04720 (CGL27_04680) - 1131082..1132311 (+) 1230 WP_119984777.1 cytochrome P450 -
  CGL27_RS04725 (CGL27_04685) - 1132326..1132520 (+) 195 WP_078638620.1 ferredoxin -
  CGL27_RS04730 (CGL27_04690) - 1132589..1133353 (+) 765 WP_119984779.1 SDR family NAD(P)-dependent oxidoreductase -
  CGL27_RS04735 (CGL27_04695) - 1133508..1135112 (+) 1605 WP_119984781.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 22929.44 Da        Isoelectric Point: 6.8541

>NTDB_id=201475 CGL27_RS04710 WP_119984775.1 1129498..1130157(+) (vraR) [Streptomyces sp. 11-1-2]
MIHVLLVDDDAIVRAGLRLMLGGAPDIAVVAEAADGAEVPALVAAHRPDVVLMDIRMPGVDGLTATTELRARPGAPQVLV
LTTFHTDAHVLRALRGGAAGFLLKDTPPRDIVAAIRTVAAGDPVLSPAVTRRLIEQVAGGGQEDRATAARARLALLGERE
REVARAVGGGRSNAEIARELHLALPTVKAHVSRILTRLDLNNRVQIALLVHDAGESDSG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=201475 CGL27_RS04710 WP_119984775.1 1129498..1130157(+) (vraR) [Streptomyces sp. 11-1-2]
GTGATCCATGTCCTGCTGGTGGACGACGACGCGATCGTACGGGCCGGGCTGCGCCTGATGCTGGGCGGCGCCCCGGACAT
CGCGGTCGTCGCGGAGGCCGCCGACGGGGCGGAGGTGCCGGCCCTGGTCGCCGCGCACCGGCCCGATGTGGTGCTGATGG
ACATCCGGATGCCGGGTGTGGACGGGCTGACCGCCACCACCGAGCTCCGGGCCCGGCCCGGAGCCCCGCAGGTGCTGGTG
CTGACCACCTTCCACACCGACGCGCATGTGCTGCGGGCGCTGCGCGGCGGGGCGGCCGGGTTCCTCCTCAAGGACACCCC
GCCACGGGACATCGTCGCGGCCATCCGGACGGTGGCCGCCGGGGATCCGGTGCTCTCCCCCGCCGTCACCCGCCGCCTCA
TCGAGCAGGTGGCGGGAGGCGGGCAGGAGGACCGGGCCACGGCCGCCCGGGCCCGGCTGGCGCTGCTGGGCGAGCGGGAA
CGGGAAGTGGCCCGGGCGGTCGGGGGTGGCCGCTCCAACGCGGAGATCGCCCGCGAGCTGCATCTGGCGCTGCCGACGGT
GAAGGCCCATGTGTCCCGCATCCTGACCCGGCTCGACCTCAACAACCGCGTCCAGATCGCCCTGCTGGTCCACGACGCCG
GCGAGTCGGACAGCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-209)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.647

94.521

0.365