Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BKN48_RS02080 Genome accession   NZ_CP017676
Coordinates   350904..351671 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain VV2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 345904..356671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS02060 (BKN48_02060) ppsR 346078..346890 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  BKN48_RS02065 (BKN48_02065) ccpN 346916..347554 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  BKN48_RS02070 (BKN48_02070) glyS 347687..349726 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  BKN48_RS02075 (BKN48_02075) glyQ 349719..350606 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  BKN48_RS02080 (BKN48_02080) recO 350904..351671 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  BKN48_RS02085 (BKN48_02085) yqzL 351708..351851 (-) 144 WP_003230053.1 YqzL family protein -
  BKN48_RS02090 (BKN48_02090) era 351999..352904 (-) 906 WP_003230051.1 GTPase Era -
  BKN48_RS02095 (BKN48_02095) - 352885..353295 (-) 411 WP_003230049.1 cytidine deaminase -
  BKN48_RS02100 (BKN48_02100) unpK 353414..353785 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  BKN48_RS02105 (BKN48_02105) ybeY 353766..354239 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  BKN48_RS02110 (BKN48_02110) pgpH 354240..356375 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=201468 BKN48_RS02080 WP_014477369.1 350904..351671(-) (recO) [Bacillus subtilis strain VV2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=201468 BKN48_RS02080 WP_014477369.1 350904..351671(-) (recO) [Bacillus subtilis strain VV2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAATTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment