Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BKN48_RS00560 Genome accession   NZ_CP017676
Coordinates   84884..85504 (+) Length   206 a.a.
NCBI ID   WP_070547480.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79884..90504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS00520 (BKN48_00520) ptsA 81015..81521 (-) 507 WP_015483368.1 PTS sugar transporter subunit IIA -
  BKN48_RS00525 (BKN48_00525) ypqA 81659..82078 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  BKN48_RS00530 (BKN48_00530) sppG 82099..82476 (-) 378 WP_004398696.1 YppG family protein -
  BKN48_RS00535 (BKN48_00535) yppF 82664..82852 (+) 189 WP_003230690.1 YppF family protein -
  BKN48_RS00540 (BKN48_00540) yppE 82891..83262 (-) 372 WP_021481525.1 YppE family protein -
  BKN48_RS00545 (BKN48_00545) yppD 83308..83553 (-) 246 WP_021481526.1 DUF5446 family protein -
  BKN48_RS00550 (BKN48_00550) sspM 83752..83856 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BKN48_RS00555 (BKN48_00555) yppC 83881..84843 (-) 963 WP_070547479.1 DUF2515 domain-containing protein -
  BKN48_RS00560 (BKN48_00560) recU 84884..85504 (+) 621 WP_070547480.1 Holliday junction resolvase RecU Machinery gene
  BKN48_RS00565 (BKN48_00565) ponA 85526..88285 (+) 2760 WP_038429203.1 transglycosylase domain-containing protein -
  BKN48_RS00570 (BKN48_00570) ypoC 88361..88855 (-) 495 WP_015383948.1 YpoC family protein -
  BKN48_RS00575 (BKN48_00575) nth 88852..89511 (-) 660 WP_009967580.1 endonuclease III -
  BKN48_RS00580 (BKN48_00580) dnaD 89530..90228 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23987.14 Da        Isoelectric Point: 9.6240

>NTDB_id=201456 BKN48_RS00560 WP_070547480.1 84884..85504(+) (recU) [Bacillus subtilis strain VV2]
MIRYPNGKTFQPKHSVSSQNSQKRVPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=201456 BKN48_RS00560 WP_070547480.1 84884..85504(+) (recU) [Bacillus subtilis strain VV2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGTCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment