Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SSU05_0432 Genome accession   CP000407
Coordinates   413645..414136 (+) Length   163 a.a.
NCBI ID   ABP89399.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 408645..419136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0427 - 408738..409550 (+) 813 ABP89394.1 Serine/threonine protein phosphatase -
  SSU05_0428 stkP 409550..411544 (+) 1995 ABP89395.1 Serine/threonine protein kinase Regulator
  SSU05_0429 - 411908..412660 (+) 753 ABP89396.1 Predicted membrane protein -
  SSU05_0430 - 412657..413673 (+) 1017 ABP89398.1 Signal transduction histidine kinase -
  SSU05_0431 - 413189..413281 (+) 93 ABP89397.1 hypothetical protein -
  SSU05_0432 vraR 413645..414136 (+) 492 ABP89399.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Regulator
  SSU05_0433 - 414338..415738 (+) 1401 ABP89400.1 Predicted hydrolase of the HAD superfamily -
  SSU05_0434 - 415740..416111 (+) 372 ABP89401.1 Predicted RNA binding protein (contains ribosomal protein S1 domain) -
  SSU05_0435 - 416137..417111 (-) 975 ABP89402.1 O-acetylserine lyase -
  SSU05_0436 - 417153..417791 (-) 639 ABP89403.1 Uncharacterized conserved protein -
  SSU05_0437 comFA/cflA 417839..419134 (+) 1296 ABP89404.1 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18177.99 Da        Isoelectric Point: 4.5463

>NTDB_id=20142 SSU05_0432 ABP89399.1 413645..414136(+) (vraR) [Streptococcus suis 05ZYH33]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREMLDAVS
QGI

Nucleotide


Download         Length: 492 bp        

>NTDB_id=20142 SSU05_0432 ABP89399.1 413645..414136(+) (vraR) [Streptococcus suis 05ZYH33]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGCCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCGTTAGAGGTTAAACCTGATGTTGTAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACTCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTATCTAGATAATGAGAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGCTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATGCTTGACGCTGTTAGC
CAAGGGATATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.584

98.773

0.46
  letA Legionella pneumophila str. Paris

36.97

100

0.374
  letA Legionella pneumophila strain ERS1305867

36.97

100

0.374

Multiple sequence alignment