Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BJP62_RS13150 Genome accession   NZ_CP017668
Coordinates   2781284..2782708 (+) Length   474 a.a.
NCBI ID   WP_070530256.1    Uniprot ID   A0A1D9BG31
Organism   Jeongeupia sp. USM3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776284..2787708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP62_RS13125 (BJP62_13125) - 2777615..2778586 (+) 972 WP_070530248.1 KpsF/GutQ family sugar-phosphate isomerase -
  BJP62_RS13130 (BJP62_13130) - 2778601..2779125 (+) 525 WP_070530249.1 HAD family hydrolase -
  BJP62_RS13135 (BJP62_13135) lptC 2779129..2779707 (+) 579 WP_070530251.1 LPS export ABC transporter periplasmic protein LptC -
  BJP62_RS13140 (BJP62_13140) lptA 2779682..2780275 (+) 594 WP_070530252.1 lipopolysaccharide transport periplasmic protein LptA -
  BJP62_RS13145 (BJP62_13145) lptB 2780272..2781006 (+) 735 WP_070530254.1 LPS export ABC transporter ATP-binding protein -
  BJP62_RS13150 (BJP62_13150) rpoN/rpoN1 2781284..2782708 (+) 1425 WP_070530256.1 RNA polymerase factor sigma-54 Machinery gene
  BJP62_RS13155 (BJP62_13155) hpf 2782737..2783066 (+) 330 WP_070530258.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BJP62_RS13160 (BJP62_13160) ptsN 2783180..2783647 (+) 468 WP_070530260.1 PTS IIA-like nitrogen regulatory protein PtsN -
  BJP62_RS13165 (BJP62_13165) hprK 2783722..2784666 (+) 945 WP_070530262.1 HPr(Ser) kinase/phosphatase -
  BJP62_RS13170 (BJP62_13170) rapZ 2784686..2785534 (+) 849 WP_070530264.1 RNase adapter RapZ -
  BJP62_RS13175 (BJP62_13175) - 2785531..2785902 (+) 372 WP_070530265.1 NusG domain II-containing protein -
  BJP62_RS13180 (BJP62_13180) - 2785883..2786398 (+) 516 WP_070530267.1 Gx transporter family protein -
  BJP62_RS13185 (BJP62_13185) - 2786395..2786994 (+) 600 WP_070530269.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 52523.48 Da        Isoelectric Point: 4.6859

>NTDB_id=201400 BJP62_RS13150 WP_070530256.1 2781284..2782708(+) (rpoN/rpoN1) [Jeongeupia sp. USM3]
MKQSLQLRLSQQLNLTPQLQQSIKLLQLSTLDFQQEVERFLAENPLLERGEDHHASSEGEGGAEAPAENSGSDDAPASES
AFDNDDWGWEGSGGGARSGGDDDDDFDPASNIARELTLREHLLAQAGLLPIPLRDRAALTWLIDALDDDGFLTQPLEEIL
VLLPAELAGEFEFEPDDLAIALARLKQLEPLGVGARDMAESLALQLAALPVSDVRQLALEIVRDSLDLLAARDYTRLKRR
LKCDETELKAAQALIVSLNPRPGAQWSDESSHYVVADVLVSKFKGQWRVRLNDAARPKLRVNRMYADILQRSDGGSMARE
LQEAKWLVKSVQQRFDTILRVGQAIVDKQRAFFEHGEIAMRPLVLRDIASELDLHESTVSRVTTQKYMLTPRGIFEFKYF
FGSHVETEAGGEASATAIKAQIRQMIQSEDKLKPLSDSAIAEALAGQGVVVARRTVAKYREAMQIPPVNLRKCL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=201400 BJP62_RS13150 WP_070530256.1 2781284..2782708(+) (rpoN/rpoN1) [Jeongeupia sp. USM3]
ATGAAGCAATCGCTGCAACTCCGCCTCTCGCAACAGCTGAACCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GCTGTCGACGCTCGATTTCCAGCAGGAGGTCGAGCGCTTCCTGGCCGAAAATCCGCTGCTTGAGCGCGGCGAAGACCATC
ACGCCTCAAGCGAGGGCGAAGGCGGCGCCGAGGCGCCGGCCGAGAACAGCGGCAGCGATGATGCGCCGGCAAGCGAGTCG
GCATTCGACAATGACGACTGGGGCTGGGAAGGTAGTGGCGGCGGCGCGCGCAGCGGCGGCGATGACGACGATGATTTCGA
CCCCGCCAGCAACATCGCTCGCGAGCTGACCTTGCGCGAGCACCTGCTGGCGCAGGCCGGACTGCTGCCGATTCCGCTGC
GCGACCGCGCGGCGCTGACCTGGCTGATTGACGCGCTCGACGACGACGGCTTCCTGACCCAGCCGCTCGAGGAAATCCTC
GTGCTGCTGCCGGCGGAACTTGCCGGCGAGTTCGAGTTCGAACCCGATGACCTGGCGATCGCGCTGGCGCGGCTCAAGCA
GCTCGAGCCGCTCGGTGTCGGCGCCAGAGATATGGCCGAGTCGCTGGCACTTCAACTCGCAGCGTTGCCAGTGTCTGACG
TGCGTCAACTGGCGCTCGAGATCGTGCGGGACAGTCTCGATTTGCTCGCGGCACGGGACTACACTAGGTTGAAACGGCGT
CTGAAATGCGATGAAACGGAACTGAAGGCGGCGCAAGCGCTGATCGTCAGCCTGAATCCGCGGCCAGGGGCACAATGGAG
CGACGAATCGTCGCATTATGTGGTCGCTGACGTCTTGGTCAGCAAGTTCAAGGGGCAATGGCGAGTGCGGTTGAACGACG
CGGCCCGACCCAAACTCAGGGTCAACCGGATGTACGCCGACATTCTGCAGCGCAGCGATGGCGGATCGATGGCCCGCGAG
CTGCAGGAAGCCAAGTGGCTGGTCAAGAGCGTCCAGCAGCGCTTCGATACCATCCTGCGCGTCGGCCAGGCCATCGTCGA
CAAGCAGCGCGCCTTCTTCGAGCATGGCGAGATCGCCATGCGCCCTCTGGTGCTGCGCGACATCGCGTCCGAACTCGACC
TGCACGAATCGACCGTTTCGCGCGTCACCACCCAGAAGTACATGCTGACGCCGCGCGGCATCTTCGAATTCAAGTATTTC
TTCGGCAGTCATGTCGAGACCGAGGCCGGCGGCGAAGCGTCGGCGACTGCGATCAAGGCGCAGATTCGCCAGATGATCCA
GTCGGAGGACAAGCTCAAGCCGTTGTCGGATAGTGCCATCGCCGAAGCGTTGGCAGGGCAAGGGGTCGTGGTTGCGCGAC
GAACCGTTGCCAAATACAGGGAGGCGATGCAAATCCCTCCCGTCAATCTGCGCAAATGCCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BG31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.571

100

0.57

Multiple sequence alignment