Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CHF17_RS03220 Genome accession   NZ_CP022537
Coordinates   559611..561269 (+) Length   552 a.a.
NCBI ID   WP_000923611.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 874391     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 554611..566269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS03190 (CHF17_00634) - 554952..555788 (+) 837 WP_000634982.1 NAD(P)H-hydrate dehydratase -
  CHF17_RS03195 (CHF17_00635) xseA 555914..557254 (+) 1341 WP_001286946.1 exodeoxyribonuclease VII large subunit -
  CHF17_RS03200 (CHF17_00636) - 557232..557447 (+) 216 WP_001280898.1 exodeoxyribonuclease VII small subunit -
  CHF17_RS03205 (CHF17_00637) - 557447..558319 (+) 873 WP_000256277.1 polyprenyl synthetase family protein -
  CHF17_RS03210 (CHF17_00638) - 558312..559139 (+) 828 WP_001041038.1 TlyA family RNA methyltransferase -
  CHF17_RS03215 (CHF17_00639) - 559126..559599 (+) 474 WP_000747940.1 arginine repressor -
  CHF17_RS03220 (CHF17_00640) recN 559611..561269 (+) 1659 WP_000923611.1 DNA repair protein RecN Machinery gene
  CHF17_RS03225 (CHF17_00641) - 561382..562218 (+) 837 WP_000034835.1 DegV family protein -
  CHF17_RS03230 (CHF17_00642) - 562211..563050 (+) 840 WP_001035227.1 SGNH/GDSL hydrolase family protein -
  CHF17_RS03235 (CHF17_00643) - 563025..563627 (+) 603 WP_000806954.1 YpmS family protein -
  CHF17_RS03240 (CHF17_00644) - 563730..564005 (+) 276 WP_001284634.1 HU family DNA-binding protein -
  CHF17_RS03245 (CHF17_00645) - 564202..564399 (+) 198 WP_001290370.1 hypothetical protein -
  CHF17_RS03250 (CHF17_00646) - 564443..565375 (-) 933 WP_000254068.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62513.79 Da        Isoelectric Point: 4.5358

>NTDB_id=201400 CHF17_RS03220 WP_000923611.1 559611..561269(+) (recN) [Streptococcus agalactiae strain 874391]
MLLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGARASVEVIRHGANKAEIEGFFSIEKNQSLVQLL
EENGIELADELIIRREIFQNGRSVSRINGQMVNLSTLKAVGHYLVDIHGQHDQEELMKPNMHILMLDEFGNTEFNVIKER
YQSLFDAYRQLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTLTNAYLMLDNEE
FSSLSNVRSAMNDLMALEEFDREYKDLSTNLSEAYYVIEEVTKRLGDVIDDLDFDAGLLQEIENRLDVINTITRKYGGDV
NDVLDYFDNITKEYSLLTGSEESSDALEKELKILEHDLIESANQLSLERHKLAKQLENEIKQELTELYMEKADFQVQFTK
GKFNKEGNEIVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLAQVIAIADYQYFIEKISSDSSTVSTVRLLSYEERVEEIAKMLAGNNVTDTARTQAKELLGS

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=201400 CHF17_RS03220 WP_000923611.1 559611..561269(+) (recN) [Streptococcus agalactiae strain 874391]
ATGCTTTTAGAAATTTCTATTAAGAATTTCGCTATTATCGAAGAAATTTCACTTAATTTTGAAACAGGAATGACTGTTTT
AACTGGTGAGACTGGTGCAGGGAAATCTATCATTATTGATGCTATGAATATGATGTTAGGAGCCCGTGCTAGTGTTGAAG
TGATTCGCCATGGTGCTAACAAAGCAGAAATTGAAGGATTTTTCTCTATTGAAAAAAATCAATCATTAGTCCAATTATTG
GAAGAAAATGGCATTGAATTAGCAGATGAATTAATTATTCGCCGAGAAATCTTTCAAAATGGGCGCAGCGTTAGTCGAAT
TAATGGGCAAATGGTGAATTTGTCAACACTAAAAGCTGTGGGGCATTATTTGGTAGACATTCATGGTCAGCATGACCAAG
AGGAACTAATGAAACCTAACATGCACATTCTGATGTTAGATGAATTTGGTAATACAGAATTTAATGTCATAAAAGAGCGT
TATCAAAGTCTTTTTGATGCTTATCGTCAGCTTCGTAAACGTGTATTGGATAAGCAAAAAAATGAACAAGAGAATAAATC
ACGTATTGAAATGCTAGAATTTCAAATAGCAGAAATTGAGTCTGTAGCCCTTAAATCAGATGAAGACCAAACGCTACTCA
AGCAACGTGATAAATTAATGAATCATAAGAATATTGCAGATACTTTGACAAATGCATATCTTATGTTAGATAACGAAGAG
TTTTCAAGTTTATCGAATGTTCGTTCTGCAATGAATGACCTTATGGCTTTAGAAGAATTTGATCGAGAATATAAAGATCT
TTCCACCAATCTTTCAGAAGCTTACTACGTTATTGAAGAAGTTACTAAACGTTTAGGTGACGTTATCGATGATTTAGATT
TTGACGCTGGTTTACTACAAGAAATTGAAAATAGACTAGATGTTATTAACACAATAACGCGAAAATATGGCGGTGATGTG
AATGATGTTTTAGACTATTTTGATAACATTACTAAAGAATATAGTCTATTGACAGGTAGTGAAGAGTCCTCAGATGCTTT
AGAAAAAGAATTAAAGATTTTAGAACACGATTTGATTGAATCAGCAAATCAATTAAGTTTAGAGCGTCATAAGCTAGCTA
AACAATTGGAAAATGAAATCAAACAAGAATTAACAGAGCTTTATATGGAGAAAGCTGATTTCCAAGTTCAATTTACAAAA
GGAAAATTTAATAAAGAAGGGAACGAAATCGTTGAATTTTATATTTCAACGAATCCCGGAGAGGGCTTTAAGCCATTGGT
AAAAGTGGCTTCAGGAGGAGAGTTATCTCGATTGATGTTAGCTATTAAATCTGCTTTTTCACGTAAGGAAGATAAAACTT
CCATTGTATTTGATGAGGTGGATACAGGAGTTTCTGGTCGCGTGGCCCAGGCTATTGCTCAAAAAATTCACAAGATTGGT
AGTCATGGACAAGTTTTAGCAATTTCTCATTTAGCTCAGGTTATTGCAATAGCGGATTACCAATATTTTATTGAAAAAAT
TTCCAGTGACTCTTCAACAGTTTCAACGGTAAGGCTTTTAAGCTATGAAGAACGTGTAGAAGAAATCGCTAAAATGTTGG
CAGGAAACAATGTAACTGATACTGCACGTACTCAAGCTAAAGAATTACTTGGTAGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.563

100

0.447

Multiple sequence alignment