Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BKM67_RS10065 Genome accession   NZ_CP017667
Coordinates   2069109..2070476 (-) Length   455 a.a.
NCBI ID   WP_014638739.1    Uniprot ID   G7SEN8
Organism   Streptococcus suis strain 1081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064109..2075476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS10055 (BKM67_09820) - 2067510..2068268 (-) 759 WP_002939965.1 TIGR00266 family protein -
  BKM67_RS10060 (BKM67_09825) - 2068492..2068986 (-) 495 WP_013730632.1 carbonic anhydrase -
  BKM67_RS10065 (BKM67_09830) radA 2069109..2070476 (-) 1368 WP_014638739.1 DNA repair protein RadA Machinery gene
  BKM67_RS10070 (BKM67_09835) - 2070483..2071016 (-) 534 WP_044693323.1 histidine phosphatase family protein -
  BKM67_RS10075 (BKM67_09840) - 2071022..2071465 (-) 444 WP_024401380.1 dUTP diphosphatase -
  BKM67_RS10080 (BKM67_09845) - 2071484..2072470 (-) 987 WP_024376118.1 virulence RhuM family protein -
  BKM67_RS10085 (BKM67_09850) - 2072489..2073025 (-) 537 WP_105184266.1 hypothetical protein -
  BKM67_RS10090 (BKM67_09855) - 2073090..2074874 (-) 1785 WP_105184265.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49873.40 Da        Isoelectric Point: 6.5158

>NTDB_id=201378 BKM67_RS10065 WP_014638739.1 2069109..2070476(-) (radA) [Streptococcus suis strain 1081]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=201378 BKM67_RS10065 WP_014638739.1 2069109..2070476(-) (radA) [Streptococcus suis strain 1081]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAGGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGACCTATGAAGCTCAATGAAGTGTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGTCTAGTTCTCATTGGTGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTTTGGGCGACATTGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
CTCTGTCAGTCAAGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCCATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAATCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTCGCTTCCAGTTACAAGGATAAGCCAACTAATCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SEN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment