Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   BKM66_RS08550 Genome accession   NZ_CP017666
Coordinates   1756300..1758090 (-) Length   596 a.a.
NCBI ID   WP_105183875.1    Uniprot ID   A0AAD0P927
Organism   Streptococcus suis strain 0061     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751300..1763090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS08525 (BKM66_08350) - 1751621..1751986 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  BKM66_RS08530 (BKM66_08355) - 1752108..1753010 (-) 903 WP_029171026.1 ABC transporter permease -
  BKM66_RS08535 (BKM66_08360) opp4B 1753024..1753980 (-) 957 WP_024406550.1 oligopeptide ABC transporter permease -
  BKM66_RS08540 (BKM66_08365) - 1753982..1754923 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  BKM66_RS08545 (BKM66_08370) - 1754926..1755924 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  BKM66_RS08550 (BKM66_08375) oppA 1756300..1758090 (-) 1791 WP_105183875.1 oligopeptide ABC transporter substrate-binding protein Regulator
  BKM66_RS08555 (BKM66_08380) pbp3 1758303..1759544 (+) 1242 WP_105183876.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  BKM66_RS08565 (BKM66_08390) sufB 1759933..1761348 (-) 1416 WP_105183901.1 Fe-S cluster assembly protein SufB -
  BKM66_RS08570 (BKM66_08395) sufU 1761492..1761932 (-) 441 WP_044684183.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65648.53 Da        Isoelectric Point: 4.5282

>NTDB_id=201321 BKM66_RS08550 WP_105183875.1 1756300..1758090(-) (oppA) [Streptococcus suis strain 0061]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGLKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=201321 BKM66_RS08550 WP_105183875.1 1756300..1758090(-) (oppA) [Streptococcus suis strain 0061]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTGTCACCAACAACTTCATCAGGTCTTTTAATTGACGAGTTGACTGAGAATACTACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTATATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTCTTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCCCCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGTCCGTGGAAG
ATTAAAGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAATCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGGAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCCATTCCAACATTTGAGTCTGAGTCAATTACTGCG
CTTAACAAACGCGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.477

100

0.965

Multiple sequence alignment