Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BJP61_RS18345 Genome accession   NZ_CP017662
Coordinates   3896483..3897865 (-) Length   460 a.a.
NCBI ID   WP_171998962.1    Uniprot ID   -
Organism   Cronobacter sp. JZ38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3891483..3902865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP61_RS18325 - 3891812..3892588 (-) 777 WP_171998957.1 ABC transporter permease -
  BJP61_RS18330 - 3892926..3893831 (-) 906 WP_171998959.1 LysR family transcriptional regulator -
  BJP61_RS18335 - 3893952..3894953 (+) 1002 WP_171998960.1 zinc-binding alcohol dehydrogenase family protein -
  BJP61_RS18340 nadR 3895093..3896325 (-) 1233 WP_038865094.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  BJP61_RS18345 radA 3896483..3897865 (-) 1383 WP_171998962.1 DNA repair protein RadA Machinery gene
  BJP61_RS18350 serB 3897877..3898848 (-) 972 WP_171998963.1 phosphoserine phosphatase -
  BJP61_RS18355 - 3898955..3899617 (+) 663 WP_038865105.1 YtjB family periplasmic protein -
  BJP61_RS18360 lplA 3899665..3900681 (+) 1017 WP_171998965.1 lipoate--protein ligase LplA -
  BJP61_RS18365 deoD 3900900..3901619 (-) 720 WP_007767260.1 purine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49403.02 Da        Isoelectric Point: 7.3949

>NTDB_id=201276 BJP61_RS18345 WP_171998962.1 3896483..3897865(-) (radA) [Cronobacter sp. JZ38]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPQAARNERLSGYAGSAGVSKVQKLSEISLEALPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLGEQMKTLYVTGEESLQQVAMRAHRLGLPTTNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLADALTVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=201276 BJP61_RS18345 WP_171998962.1 3896483..3897865(-) (radA) [Cronobacter sp. JZ38]
GTGGCGAAAGCTCCAAAACGCGCATTTGTCTGTAACGAGTGTGGTGCGGATTATCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGTCATGCCTGGAATACCATCACCGAGGTGCGTCTCGCCGCCTCGCCGCAAGCGGCGCGCAATGAACGACTCTCCGGCT
ACGCAGGTAGCGCGGGCGTCTCTAAAGTGCAAAAGCTTTCTGAGATTAGCCTTGAGGCGCTGCCGCGTTTCTCGACCGGT
TTTAAAGAGTTTGACCGCGTGCTTGGCGGCGGCGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAACCCGGGCGCCGG
AAAATCGACGCTGCTGCTGCAAACGCTCTGCAAGCTTGGCGAGCAGATGAAAACGCTCTACGTCACCGGCGAGGAGTCGC
TGCAACAGGTGGCGATGCGCGCGCATCGTCTGGGCCTGCCGACGACGAATCTCAACATGCTCTCGGAAACCAGCATCGAA
CAGATCTGCCTTATCGCCGAAGAAGAGCAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTAATGCATATGGCGGACGT
GCAGTCGTCGCCGGGCAGCGTCGCGCAGGTGCGTGAAACCGCCGCCTATCTGACGCGCTTCGCCAAAACCCGCGGCGTGG
CGATTGTTATGGTCGGCCATGTGACCAAAGACGGCTCGCTGGCGGGCCCGAAAGTGCTCGAACACTGTATCGACTGTTCG
GTGCTGCTGGACGGCGACGCCGATTCGCGTTTTCGCACGCTGCGCAGCCATAAAAACCGCTTTGGCGCAGTGAATGAGCT
TGGCGTGTTCGCGATGACGGAACAGGGTCTGCGCGAAGTCAGCAACCCGTCGGCCATTTTCTTAAGCCGTGGCGATGAAG
TCACTTCCGGCAGCTCGGTGATGGTGGTCTGGGAAGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATCAG
TCAATGATGGCGAACCCCAGACGCGTGGCCGTGGGCCTTGAGCAGAACCGCCTTGCGATCCTTCTTGCGGTGTTGCACCG
CCACGGCGGACTGCAAATGGCCGATCAGGATGTGTTCGTCAACGTGGTCGGCGGGGTGAAAGTCACCGAGACCAGCGCTG
ACCTGGCGCTGCTGCTGGCGATGGTTTCCAGCCTGCGCGATCGACCACTGCCGCAGGATCTCGTCGTGTTTGGCGAGGTG
GGCCTCGCAGGCGAGATTCGCCCGGTGCCAAGCGGCCAGGAGCGTATCTCCGAAGCGGCGAAGCACGGTTTCCGTCGCGC
CATTGTGCCTGCCGCCAACGTCCCGAAAAAAGTGCCCGAAGGCATGCAGATTTTCGGTGTTAAAAAGCTCGCGGATGCGC
TAACTGTCTTTGACGACTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.86

99.13

0.435
  radA Streptococcus pneumoniae D39

43.86

99.13

0.435
  radA Streptococcus pneumoniae R6

43.86

99.13

0.435
  radA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  radA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  radA Streptococcus mitis SK321

43.86

99.13

0.435

Multiple sequence alignment