Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BJP58_RS09080 Genome accession   NZ_CP017659
Coordinates   2028004..2028957 (-) Length   317 a.a.
NCBI ID   WP_071219984.1    Uniprot ID   A0A1S2F668
Organism   Paenibacillus sp. JZ16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023004..2033957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP58_RS09060 - 2023537..2024961 (-) 1425 WP_194543643.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  BJP58_RS09065 - 2025141..2026112 (-) 972 WP_194543644.1 siderophore ABC transporter substrate-binding protein -
  BJP58_RS09070 - 2026312..2027070 (-) 759 WP_076325073.1 ABC transporter ATP-binding protein -
  BJP58_RS09075 - 2027067..2028014 (-) 948 WP_071219986.1 iron chelate uptake ABC transporter family permease subunit -
  BJP58_RS09080 ceuB 2028004..2028957 (-) 954 WP_071219984.1 ABC transporter permease Machinery gene
  BJP58_RS09085 - 2029489..2030091 (+) 603 WP_194543645.1 nitroreductase family protein -
  BJP58_RS09090 - 2030464..2031069 (+) 606 WP_194543646.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  BJP58_RS09095 - 2031142..2031240 (-) 99 WP_194543647.1 YjcZ family sporulation protein -
  BJP58_RS09100 - 2031358..2032056 (-) 699 WP_194543648.1 nucleotidyltransferase domain-containing protein -
  BJP58_RS09105 - 2032216..2032923 (+) 708 WP_233355013.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34958.40 Da        Isoelectric Point: 10.0377

>NTDB_id=201214 BJP58_RS09080 WP_071219984.1 2028004..2028957(-) (ceuB) [Paenibacillus sp. JZ16]
MKIRYLFAAVVVLSIISLFIGVKDISPLQLFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYLSIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=201214 BJP58_RS09080 WP_071219984.1 2028004..2028957(-) (ceuB) [Paenibacillus sp. JZ16]
ATGAAGATTAGATACTTATTTGCAGCCGTTGTGGTACTCTCGATAATCTCATTATTTATTGGAGTTAAGGATATCTCGCC
ACTGCAATTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTCAGCCGGATTCCTAGGCTTGTCAGTCTCATAT
TGGCGGGTGTCAGCATGAGCATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAATAAGTTCGTATCGCCCACCACGGCA
GGTACGATGGACTCTGCCAGACTGGGGATATTGGTAGCCATGCTTGTCTTCACGACAAGCGGACCGCTTATCAAAATGCT
TGTGGCATTTGTATTCGCTCTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATTAAGTTCAAGGATGCGATCT
TCATCCCGCTCGTAGGGCTGATGTTCGGTAATATCGTCAGTTCGATCGCCACCTTCTTTGCATACAAATATGATCTTATT
CAGAATATGTCCGCATGGCTCCAGGGTGATTTTTCCATGATCATGAAGGGCCAGTATGAAATGCTCTATCTTAGTATCCC
GCTTGTGATTCTGGCGTATCTGTTCGCCAACAAGTTTACGGTGGCCGGAATGGGAGAGGAGTTTGCTACCAACCTGGGCC
TTCACTACCGGAGAGTTGTGAATCTGGGACTGGTCATCGTGGCGCTGGTTACGGCTTCCGTCGTGCTGACGGTCGGCGTG
ATTCCGTTTCTTGGTCTGATCATACCTAATATTGTTAGTTTGTACTTAGGAGACCATTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGTTTCGTACTGTTCTGTGACATCCTGGGCCGGATCATTATTTATCCCTATGAAATTCCGATTA
GTCTAACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2F668

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.286

99.369

0.539

Multiple sequence alignment