Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SSU05_2193 Genome accession   CP000407
Coordinates   2095342..2095908 (+) Length   188 a.a.
NCBI ID   ABP91159.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2090342..2100908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2190 - 2092724..2093425 (-) 702 ABP91156.1 Predicted membrane protein -
  SSU05_2191 - 2093432..2093935 (-) 504 ABP91157.1 Uncharacterized conserved protein -
  SSU05_2192 htrA 2094085..2095281 (+) 1197 ABP91158.1 Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain Regulator
  SSU05_2193 spo0J 2095342..2095908 (+) 567 ABP91159.1 Predicted transcriptional regulator Regulator
  SSU05_2194 - 2095892..2096107 (+) 216 ABP91160.1 Predicted transcriptional regulator -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21268.34 Da        Isoelectric Point: 5.7015

>NTDB_id=20118 SSU05_2193 ABP91159.1 2095342..2095908(+) (spo0J) [Streptococcus suis 05ZYH33]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVPYA

Nucleotide


Download         Length: 567 bp        

>NTDB_id=20118 SSU05_2193 ABP91159.1 2095342..2095908(+) (spo0J) [Streptococcus suis 05ZYH33]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCCGTA
CGCTTGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.903

98.936

0.622

Multiple sequence alignment