Detailed information NTG0201173

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CGU46_RS01895
• Genome accession: NZ_CP022525
• Coordinates: 385264..386268 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Ocean-1175
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 380264..391268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGU46_RS01885 (CGU46_01885)	fdxA	382591..382914 (+)	324	WP_003092272.1	ferredoxin FdxA	-
CGU46_RS01890 (CGU46_01890)	ltrA	383042..384463 (-)	1422	WP_011805433.1	group II intron reverse transcriptase/maturase	-
CGU46_RS01895 (CGU46_01895)	rpoS	385264..386268 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CGU46_RS01900 (CGU46_01900)	-	386373..387266 (-)	894	WP_021265159.1	peptidoglycan DD-metalloendopeptidase family protein	-
CGU46_RS01905 (CGU46_01905)	-	387312..387947 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CGU46_RS01910 (CGU46_01910)	surE	387980..388729 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CGU46_RS01915 (CGU46_01915)	truD	388717..389784 (-)	1068	WP_023100864.1	tRNA pseudouridine(13) synthase TruD	-
CGU46_RS01920 (CGU46_01920)	ispF	389781..390254 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CGU46_RS01925 (CGU46_01925)	fghA	390325..391176 (-)	852	WP_003163269.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=201173 CGU46_RS01895 WP_003113871.1 385264..386268(-) (rpoS) [Pseudomonas aeruginosa strain Ocean-1175]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=201173 CGU46_RS01895 WP_003113871.1 385264..386268(-) (rpoS) [Pseudomonas aeruginosa strain Ocean-1175]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653