Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CEK59_RS28170 Genome accession   NZ_CP022478
Coordinates   5940010..5941365 (+) Length   451 a.a.
NCBI ID   WP_127891102.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5935010..5946365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS28150 (CEK59_28040) - 5935847..5936413 (-) 567 WP_034026416.1 hypothetical protein -
  CEK59_RS28155 (CEK59_28045) rsmD 5936416..5937012 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CEK59_RS28160 (CEK59_28050) - 5937012..5938499 (-) 1488 WP_058160873.1 pitrilysin family protein -
  CEK59_RS28165 (CEK59_28055) - 5938492..5939889 (-) 1398 WP_003084498.1 pitrilysin family protein -
  CEK59_RS28170 (CEK59_28060) pilA 5940010..5941365 (+) 1356 WP_127891102.1 signal recognition particle-docking protein FtsY Machinery gene
  CEK59_RS28175 (CEK59_28065) ftsE 5941362..5942033 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  CEK59_RS28180 (CEK59_28070) ftsX 5942033..5943040 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  CEK59_RS28185 (CEK59_28075) rpoH 5943154..5944008 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  CEK59_RS28190 (CEK59_28080) - 5944073..5944678 (+) 606 WP_003084511.1 hypothetical protein -
  CEK59_RS28195 (CEK59_28085) mtgA 5944683..5945414 (-) 732 WP_019486534.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  CEK59_RS28200 (CEK59_28090) - 5945451..5945828 (+) 378 WP_034082334.1 DUF423 domain-containing protein -
  CEK59_RS28205 (CEK59_28095) thiS 5945931..5946131 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47967.41 Da        Isoelectric Point: 4.5795

>NTDB_id=201156 CEK59_RS28170 WP_127891102.1 5940010..5941365(+) (pilA) [Pseudomonas aeruginosa strain LW]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPVEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASI
GEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVD
VAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAV
QAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKL
DGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=201156 CEK59_RS28170 WP_127891102.1 5940010..5941365(+) (pilA) [Pseudomonas aeruginosa strain LW]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGTCGAGCCGCCGGCGCCG
GTCGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTC
CGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATC
GGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCT
GACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAATCTGACCAAGCGCGTGGCGCGCAAGGAACTGGCCG
ACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAA
GAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGG
TCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTG
CAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGA
GGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCG
GCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTG
GACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGA
GGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(246-445)

SRP54-type protein, helical bundle domain (SRP54_N)

(161-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.575

96.009

0.457

Multiple sequence alignment