Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CEK59_RS23370 Genome accession   NZ_CP022478
Coordinates   4930962..4931558 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain LW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4925962..4936558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS23350 (CEK59_23255) aroK 4927094..4927612 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CEK59_RS23355 (CEK59_23260) pilQ 4927624..4929768 (-) 2145 WP_058161055.1 type 4a pilus secretin PilQ Machinery gene
  CEK59_RS23360 (CEK59_23265) comL/pilP 4929822..4930346 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CEK59_RS23365 (CEK59_23270) pilO 4930343..4930965 (-) 623 Protein_4516 type 4a pilus biogenesis protein PilO -
  CEK59_RS23370 (CEK59_23275) pilN 4930962..4931558 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CEK59_RS23375 (CEK59_23280) pilM 4931558..4932622 (-) 1065 WP_058161054.1 type IV pilus assembly protein PilM Machinery gene
  CEK59_RS23380 (CEK59_23285) - 4932807..4935278 (+) 2472 WP_023126737.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=201132 CEK59_RS23370 WP_003095839.1 4930962..4931558(-) (pilN) [Pseudomonas aeruginosa strain LW]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=201132 CEK59_RS23370 WP_003095839.1 4930962..4931558(-) (pilN) [Pseudomonas aeruginosa strain LW]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAATCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCTCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369