Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   CEK59_RS23360 Genome accession   NZ_CP022478
Coordinates   4929822..4930346 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain LW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4924822..4935346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS23345 (CEK59_23250) aroB 4925938..4927044 (-) 1107 WP_058161056.1 3-dehydroquinate synthase -
  CEK59_RS23350 (CEK59_23255) aroK 4927094..4927612 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CEK59_RS23355 (CEK59_23260) pilQ 4927624..4929768 (-) 2145 WP_058161055.1 type 4a pilus secretin PilQ Machinery gene
  CEK59_RS23360 (CEK59_23265) comL/pilP 4929822..4930346 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CEK59_RS23365 (CEK59_23270) pilO 4930343..4930965 (-) 623 Protein_4516 type 4a pilus biogenesis protein PilO -
  CEK59_RS23370 (CEK59_23275) pilN 4930962..4931558 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CEK59_RS23375 (CEK59_23280) pilM 4931558..4932622 (-) 1065 WP_058161054.1 type IV pilus assembly protein PilM Machinery gene
  CEK59_RS23380 (CEK59_23285) - 4932807..4935278 (+) 2472 WP_023126737.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=201131 CEK59_RS23360 WP_003095836.1 4929822..4930346(-) (comL/pilP) [Pseudomonas aeruginosa strain LW]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=201131 CEK59_RS23360 WP_003095836.1 4929822..4930346(-) (comL/pilP) [Pseudomonas aeruginosa strain LW]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTAATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362