Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CEK59_RS18965 Genome accession   NZ_CP022478
Coordinates   4005563..4007005 (-) Length   480 a.a.
NCBI ID   WP_058161145.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LW     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4000563..4012005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS18935 (CEK59_18845) - 4000889..4002004 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  CEK59_RS18940 (CEK59_18850) - 4001997..4002758 (+) 762 WP_058134690.1 DUF2334 domain-containing protein -
  CEK59_RS18945 (CEK59_18855) - 4002755..4003756 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  CEK59_RS18950 (CEK59_18860) - 4003731..4003943 (-) 213 WP_023436359.1 hypothetical protein -
  CEK59_RS18955 (CEK59_18865) purU 4003993..4004844 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  CEK59_RS18960 (CEK59_18870) mvaT 4005104..4005478 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  CEK59_RS18965 (CEK59_18875) sbcB 4005563..4007005 (-) 1443 WP_058161145.1 exodeoxyribonuclease I Machinery gene
  CEK59_RS18970 (CEK59_18880) - 4007230..4007967 (+) 738 WP_003101171.1 hypothetical protein -
  CEK59_RS18975 (CEK59_18885) - 4008005..4008802 (+) 798 WP_003120853.1 RDD family protein -
  CEK59_RS18980 (CEK59_18890) - 4008799..4009779 (+) 981 WP_003134640.1 stage II sporulation protein M -
  CEK59_RS18985 (CEK59_18895) - 4009766..4011337 (+) 1572 WP_058161143.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=201112 CEK59_RS18965 WP_058161145.1 4005563..4007005(-) (sbcB) [Pseudomonas aeruginosa strain LW]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQARLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=201112 CEK59_RS18965 WP_058161145.1 4005563..4007005(-) (sbcB) [Pseudomonas aeruginosa strain LW]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCACGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTTCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGTAAGCACAAGGTGCTCG
ACCAGGCGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44

Multiple sequence alignment