Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CEK59_RS03850 Genome accession   NZ_CP022478
Coordinates   804409..804738 (+) Length   109 a.a.
NCBI ID   WP_058160371.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LW     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799409..809738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEK59_RS03835 (CEK59_03835) - 800024..800986 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  CEK59_RS03840 (CEK59_03840) - 800986..802023 (+) 1038 WP_058160376.1 glycosyltransferase family 4 protein -
  CEK59_RS03845 (CEK59_03845) - 802221..804218 (+) 1998 WP_116271269.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  CEK59_RS03850 (CEK59_03850) comEA/comE1 804409..804738 (+) 330 WP_058160371.1 ComEA family DNA-binding protein Machinery gene
  CEK59_RS03860 (CEK59_03860) - 804955..806151 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  CEK59_RS03865 (CEK59_03865) uvrB 806339..808351 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11381.33 Da        Isoelectric Point: 8.0459

>NTDB_id=201075 CEK59_RS03850 WP_058160371.1 804409..804738(+) (comEA/comE1) [Pseudomonas aeruginosa strain LW]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTLSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=201075 CEK59_RS03850 WP_058160371.1 804409..804738(+) (comEA/comE1) [Pseudomonas aeruginosa strain LW]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCCTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment