Detailed information NTG0201070

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CEK59_RS01360
• Genome accession: NZ_CP022478
• Coordinates: 285041..286045 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LW
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 280041..291045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEK59_RS01330 (CEK59_01325)	fghA	280133..280984 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
CEK59_RS01335 (CEK59_01330)	ispF	281055..281528 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CEK59_RS01340 (CEK59_01335)	truD	281525..282592 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
CEK59_RS01345 (CEK59_01340)	surE	282580..283329 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CEK59_RS01350 (CEK59_01345)	-	283362..283997 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CEK59_RS01355 (CEK59_01350)	-	284043..284936 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
CEK59_RS01360 (CEK59_01355)	rpoS	285041..286045 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CEK59_RS01365 (CEK59_01360)	fdxA	286472..286795 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CEK59_RS01370 (CEK59_01365)	mutS	286862..289429 (-)	2568	WP_079992460.1	DNA mismatch repair protein MutS	-
CEK59_RS01380 (CEK59_01375)	-	289555..290562 (-)	1008	WP_031638797.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=201070 CEK59_RS01360 WP_003113871.1 285041..286045(+) (rpoS) [Pseudomonas aeruginosa strain LW]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=201070 CEK59_RS01360 WP_003113871.1 285041..286045(+) (rpoS) [Pseudomonas aeruginosa strain LW]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653