Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SSU05_1855 Genome accession   CP000407
Coordinates   1754075..1754809 (-) Length   244 a.a.
NCBI ID   ABP90821.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749075..1759809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1849 - 1749300..1750442 (-) 1143 ABP90815.1 Transcription elongation factor -
  SSU05_1850 - 1750516..1750992 (-) 477 ABP90816.1 unknown protein -
  SSU05_1851 - 1751557..1752195 (-) 639 ABP90817.1 Unknown protein -
  SSU05_1852 - 1752192..1752794 (-) 603 ABP90818.1 conserved hypothetical protein -
  SSU05_1854 - 1753038..1754078 (-) 1041 ABP90820.1 Predicted ABC-type exoprotein transport system, permease component -
  SSU05_1853 - 1753585..1753758 (-) 174 ABP90819.1 hypothetical protein -
  SSU05_1855 pptA 1754075..1754809 (-) 735 ABP90821.1 ABC-type multidrug transport system, ATPase component Regulator
  SSU05_1856 - 1754872..1755285 (+) 414 ABP90822.1 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases -
  SSU05_1857 - 1755287..1755589 (+) 303 ABP90823.1 Methyl-accepting chemotaxis protein -
  SSU05_1858 - 1755698..1756891 (-) 1194 ABP90824.1 Transcriptional regulator -
  SSU05_1859 - 1756888..1757415 (-) 528 ABP90825.1 Histone acetyltransferase HPA2 and related acetyltransferases -
  SSU05_1860 - 1757408..1757908 (-) 501 ABP90826.1 Predicted ATPase or kinase -
  SSU05_1861 - 1757949..1759613 (-) 1665 ABP90827.1 Predicted kinase related to dihydroxyacetone kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26788.09 Da        Isoelectric Point: 4.3999

>NTDB_id=20107 SSU05_1855 ABP90821.1 1754075..1754809(-) (pptA) [Streptococcus suis 05ZYH33]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIVIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=20107 SSU05_1855 ABP90821.1 1754075..1754809(-) (pptA) [Streptococcus suis 05ZYH33]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCCT
ATCAAGGACAGATTGTAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAAATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717

Multiple sequence alignment