Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CG450_RS22130 Genome accession   NZ_CP022477
Coordinates   4224479..4224709 (-) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain BL-010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4219479..4229709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS22120 spoVT 4220207..4220743 (-) 537 WP_003178213.1 stage V sporulation protein T -
  CG450_RS22125 mfd 4220881..4224414 (-) 3534 WP_011197468.1 transcription-repair coupling factor -
  CG450_RS22130 subA/fin 4224479..4224709 (-) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  CG450_RS22135 pth 4224766..4225332 (-) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  CG450_RS22140 - 4225449..4226075 (-) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  CG450_RS22145 - 4226156..4227106 (-) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  CG450_RS22150 glmU 4227127..4228497 (-) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CG450_RS22155 spoVG 4228802..4229095 (-) 294 WP_003178198.1 septation regulator SpoVG -
  CG450_RS22160 ridA 4229275..4229652 (-) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=201063 CG450_RS22130 WP_003178210.1 4224479..4224709(-) (subA/fin) [Bacillus licheniformis strain BL-010]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=201063 CG450_RS22130 WP_003178210.1 4224479..4224709(-) (subA/fin) [Bacillus licheniformis strain BL-010]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776

Multiple sequence alignment