Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KAB04_RS17255 Genome accession   NZ_CP017648
Coordinates   3589042..3591270 (+) Length   742 a.a.
NCBI ID   WP_000156646.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KAB04     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584042..3596270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAB04_RS17230 (KAB04_03478) - 3584957..3585295 (-) 339 WP_000434938.1 tRNA-binding protein -
  KAB04_RS21065 - 3585440..3585544 (-) 105 Protein_3409 hypothetical protein -
  KAB04_RS17235 (KAB04_03479) - 3585599..3586528 (-) 930 WP_001091151.1 IS5-like element ISAba10 family transposase -
  KAB04_RS17240 (KAB04_03480) - 3586568..3586816 (-) 249 Protein_3411 hypothetical protein -
  KAB04_RS17245 (KAB04_03481) gspG 3587083..3587664 (-) 582 WP_000865310.1 type II secretion system major pseudopilin GspG -
  KAB04_RS17250 (KAB04_03482) gspF 3587688..3588893 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  KAB04_RS17255 (KAB04_03483) priA 3589042..3591270 (+) 2229 WP_000156646.1 primosomal protein N' Machinery gene
  KAB04_RS17260 (KAB04_03484) - 3591347..3593188 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KAB04_RS17265 (KAB04_03485) - 3593354..3594229 (+) 876 WP_001281761.1 Hsp33 family molecular chaperone HslO -
  KAB04_RS20720 - 3594368..3594469 (+) 102 Protein_3417 LysE family translocator -
  KAB04_RS17270 (KAB04_03486) - 3594521..3595450 (-) 930 WP_001091151.1 IS5-like element ISAba10 family transposase -
  KAB04_RS17275 (KAB04_03487) - 3595487..3596011 (+) 525 Protein_3419 LysE family translocator -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83927.75 Da        Isoelectric Point: 8.5662

>NTDB_id=201061 KAB04_RS17255 WP_000156646.1 3589042..3591270(+) (priA) [Acinetobacter baumannii strain KAB04]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=201061 KAB04_RS17255 WP_000156646.1 3589042..3591270(+) (priA) [Acinetobacter baumannii strain KAB04]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGATAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGACGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTGCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAGCGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTCTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCTCATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAAAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATTGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGCGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATAGCAGGTGATATTGTTGATATCTGGGGGCCAATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.248

100

0.982

Multiple sequence alignment