Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CG450_RS18230 Genome accession   NZ_CP022477
Coordinates   3446745..3447461 (-) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain BL-010     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3441745..3452461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS18215 - 3442541..3444274 (-) 1734 WP_080618597.1 NTTRR-F1 domain -
  CG450_RS18220 - 3444494..3445819 (-) 1326 WP_075218302.1 NTTRR-F1 domain -
  CG450_RS18225 - 3445946..3446638 (-) 693 WP_075218303.1 N-acetyltransferase -
  CG450_RS18230 treR 3446745..3447461 (-) 717 WP_009329065.1 trehalose operon repressor Regulator
  CG450_RS18235 treC 3447483..3449171 (-) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  CG450_RS18240 treP 3449245..3450657 (-) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  CG450_RS18245 - 3450820..3451545 (-) 726 Protein_3592 alanine/glycine:cation symporter family protein -
  CG450_RS18250 - 3451607..3451993 (-) 387 WP_003179739.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=201048 CG450_RS18230 WP_009329065.1 3446745..3447461(-) (treR) [Bacillus licheniformis strain BL-010]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=201048 CG450_RS18230 WP_009329065.1 3446745..3447461(-) (treR) [Bacillus licheniformis strain BL-010]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412

Multiple sequence alignment