Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SSU05_1679 Genome accession   CP000407
Coordinates   1595691..1596677 (-) Length   328 a.a.
NCBI ID   ABP90645.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590691..1601677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1673 - 1591096..1591920 (+) 825 ABP90639.1 NAD synthase -
  SSU05_1674 - 1593216..1593743 (-) 528 ABP90640.1 Glycopeptide antibiotics resistance protein -
  SSU05_1676 - 1593740..1594162 (-) 423 ABP90641.1 Predicted Fe-S-cluster redox enzyme -
  SSU05_1675 - 1594155..1594802 (+) 648 ABP90642.1 hypothetical protein -
  SSU05_1677 - 1594227..1594853 (-) 627 ABP90643.1 Predicted Fe-S-cluster redox enzyme -
  SSU05_1678 - 1594862..1595503 (-) 642 ABP90644.1 Uncharacterized protein conserved in bacteria -
  SSU05_1679 sepM 1595691..1596677 (-) 987 ABP90645.1 Predicted secreted protein containing a PDZ domain Regulator
  SSU05_1680 - 1596728..1597216 (-) 489 ABP90646.1 lipopolysaccharide core biosynthesis protein -
  SSU05_1681 - 1597206..1597745 (-) 540 ABP90647.1 conserved hypothetical protein -
  SSU05_1682 - 1598053..1598775 (-) 723 ABP90648.1 extracellular serine protease -
  SSU05_1683 - 1598832..1599221 (-) 390 ABP90649.1 Rhodanese-related sulfurtransferase -
  SSU05_1684 - 1599218..1599493 (-) 276 ABP90650.1 hypothetical protein -
  SSU05_1685 - 1599744..1600346 (-) 603 ABP90651.1 Response regulator -
  SSU05_1686 - 1600343..1601437 (-) 1095 ABP90652.1 putative sensor histidine kinase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35343.82 Da        Isoelectric Point: 4.4111

>NTDB_id=20104 SSU05_1679 ABP90645.1 1595691..1596677(-) (sepM) [Streptococcus suis 05ZYH33]
MPVFVRLPYDLESPGGAADIRQVLTVNKQIDQEDGSYNFTYVSVQQATALQLFAAQFDPYTTVRSSEEMTGGADNEEYFR
IARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGKTFESSPDLIKYVSGLEVGSDV
TVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMFTLAIYTQLAEPDLRDGRIIAG
TGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEAAEKAGLDIEVVPVKTVQEAID
YLKKTKGE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=20104 SSU05_1679 ABP90645.1 1595691..1596677(-) (sepM) [Streptococcus suis 05ZYH33]
TTGCCAGTATTTGTTCGTCTGCCTTATGATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAA
CAAACAAATAGACCAAGAGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAGGCTACAGCTTTACAACTATTCG
CTGCTCAGTTTGATCCCTATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGT
ATAGCACGGTTTTACATGGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCT
TGATTTCTTTGGTGTCTATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTG
TGAGTATCAATGGAAAAACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTA
ACAGTTGGTTATATTAGCGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGAT
AGGTATCACTCTCGTAGATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAA
GTGCTGGTCTGATGTTTACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGT
ACGGGGACTATCGAGCAGGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGG
TGCAAGTATCTTTTTTGTACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATG
AAGAAGCTAAGGAAGCAGCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGAT
TATTTGAAGAAAACAAAGGGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(111-174)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(211-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.728

98.78

0.61

Multiple sequence alignment