Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CG450_RS13120 Genome accession   NZ_CP022477
Coordinates   2482429..2482791 (-) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain BL-010     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2477429..2487791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS13095 flhB 2478936..2480015 (-) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -
  CG450_RS13100 fliR 2480015..2480791 (-) 777 WP_003181804.1 flagellar biosynthetic protein FliR -
  CG450_RS13105 fliQ 2480799..2481068 (-) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  CG450_RS13110 fliP 2481084..2481749 (-) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  CG450_RS13115 fliZ 2481742..2482416 (-) 675 WP_009328513.1 flagella biosynthesis regulatory protein FliZ -
  CG450_RS13120 pilH 2482429..2482791 (-) 363 WP_003181796.1 response regulator Machinery gene
  CG450_RS13125 fliY 2482818..2483951 (-) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  CG450_RS13130 fliM 2483941..2484939 (-) 999 WP_003181789.1 flagellar motor switch protein FliM -
  CG450_RS13135 fliL 2484975..2485406 (-) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  CG450_RS13140 - 2485403..2485618 (-) 216 WP_003181786.1 flagellar FlbD family protein -
  CG450_RS13145 flgG 2485661..2486452 (-) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  CG450_RS13150 flgD 2486480..2486947 (-) 468 WP_003181782.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=201005 CG450_RS13120 WP_003181796.1 2482429..2482791(-) (pilH) [Bacillus licheniformis strain BL-010]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=201005 CG450_RS13120 WP_003181796.1 2482429..2482791(-) (pilH) [Bacillus licheniformis strain BL-010]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375