Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CG450_RS08580 Genome accession   NZ_CP022477
Coordinates   1643212..1643841 (+) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain BL-010     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638212..1648841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS08545 aroE 1638854..1639690 (+) 837 WP_003183706.1 shikimate dehydrogenase -
  CG450_RS08550 yhbY 1639684..1639974 (+) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  CG450_RS08555 - 1639993..1640562 (+) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  CG450_RS08560 yqeK 1640552..1641115 (+) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CG450_RS08565 rsfS 1641129..1641485 (+) 357 WP_003183699.1 ribosome silencing factor -
  CG450_RS08570 - 1641482..1642237 (+) 756 WP_011198132.1 class I SAM-dependent DNA methyltransferase -
  CG450_RS08575 comER 1642307..1643128 (-) 822 WP_009327864.1 late competence protein ComER -
  CG450_RS08580 comEA 1643212..1643841 (+) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  CG450_RS08585 - 1643910..1644479 (+) 570 WP_003183690.1 ComE operon protein 2 -
  CG450_RS08590 comEC 1644483..1646870 (+) 2388 WP_075218365.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CG450_RS08595 - 1646895..1647026 (-) 132 WP_003183686.1 YqzM family protein -
  CG450_RS08600 holA 1647256..1648299 (+) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  CG450_RS08605 rpsT 1648361..1648627 (-) 267 WP_003183682.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=200971 CG450_RS08580 WP_003183693.1 1643212..1643841(+) (comEA) [Bacillus licheniformis strain BL-010]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=200971 CG450_RS08580 WP_003183693.1 1643212..1643841(+) (comEA) [Bacillus licheniformis strain BL-010]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526

Multiple sequence alignment