Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KAB02_RS17665 Genome accession   NZ_CP017644
Coordinates   3670415..3671233 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KAB02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665415..3676233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAB02_RS17650 (KAB02_03563) pilE 3665632..3666057 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KAB02_RS17655 (KAB02_03564) pilY2 3666054..3666536 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KAB02_RS17660 (KAB02_03565) pilY1 3666549..3670403 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  KAB02_RS17665 (KAB02_03566) pilX 3670415..3671233 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KAB02_RS17670 (KAB02_03567) pilW 3671230..3672231 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  KAB02_RS17675 (KAB02_03568) pilV 3672232..3672792 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KAB02_RS17680 (KAB02_03569) fimU 3672786..3673259 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  KAB02_RS17685 (KAB02_03570) ispH 3673429..3674379 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAB02_RS17690 (KAB02_03571) gmk 3674502..3675131 (+) 630 WP_000015937.1 guanylate kinase -
  KAB02_RS17695 (KAB02_03572) rpoZ 3675204..3675482 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAB02_RS20440 - 3675521..3675650 (+) 130 Protein_3487 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=200971 KAB02_RS17665 WP_000149374.1 3670415..3671233(-) (pilX) [Acinetobacter baumannii strain KAB02]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=200971 KAB02_RS17665 WP_000149374.1 3670415..3671233(-) (pilX) [Acinetobacter baumannii strain KAB02]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment